BtaEX0020326 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006951 | LMO2
Description
Bos taurus LIM domain only 2 (rhombotin-like 1) (LMO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076352]
Coordinates
chr15:65405854-65425194:-
Coord C1 exon
chr15:65424864-65425194
Coord A exon
chr15:65417001-65417064
Coord C2 exon
chr15:65405854-65406085
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCCTTTTCTTTCAGTAA
3' ss Score
9.91
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCCATGTTCCATCCGGTCAGACACCCAGGCGGCCTACAGGCCCAGCCCCCGAGCCGTGGGCTTGCAACCCCCTCGCAGAACAGCCACTGACCCTGAGCAGAAGTGAGAAGGAAGTACCCCCTCAGCCCCAGGCTGTGGAGGGGGCCTGGCTGTCCACCAGGGACTGCGGGTGTCCTGGCAGAGACAGGAGGTAGCACAGGCCCCAGGCACTAGGGTGCCAGAGCCTCCTGAGAAGGAACAGGTGTGAAGCAGGCAATTAGCTGGGAAGGCGTCCGGGGGGCAGGCGGCCTAGAGCTGATTGGGGAAGTCACCAGGATTACATCATCGACCG
Seq A exon
TAACACCGACTCTGAAAAGAAGTTGTTTTTCACCCTGGACTTGAAGTAACTGGTGGAGAGGCAG
Seq C2 exon
GGAGCGCGGTGACTGTCCTTGAGCGCGGAGGGGCGAGCTCGCCGCCAGAGCGCCGGAGCAAGAAGAGGCGCAGGAGCGGCGGCGGCGGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGCCCCGGCAGCCGGCCAGCCCCGCGCCACAAAGGGAGCGCCCCCGCCGCCTGGCACGCCACCTCCCTCCCCAATGTCCTCGGCCATCGAGAGGAAGAGCCTGGACCCATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006951_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.143
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGCCTCCTGAGAAGGAA
R:
GCTCAAGGACAGTCACCGC
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development