HsaEX0036056 @ hg19
Exon Skipping
Gene
ENSG00000135363 | LMO2
Description
LIM domain only 2 (rhombotin-like 1) [Source:HGNC Symbol;Acc:6642]
Coordinates
chr11:33899310-33913836:-
Coord C1 exon
chr11:33913342-33913836
Coord A exon
chr11:33903370-33903433
Coord C2 exon
chr11:33899310-33899410
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCATTTTCTTTCAGTAA
3' ss Score
9.38
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAATTCGTCCAAACTGAGGATCACAAGTCTCCACATTCTGAGTAGGAGGATGAGGGTCTGAGTTAGGATTTGGGTCCTGCAGGGCTTGCTAAGGAATCCCCTGATGGCCTAGGATTCCACGCAGAGCACATCTGGTGTGAGAGAGCTCGCTGCAAGGGTGAAGGCTCCGCCCTATCAGATAGACAACCAGGCCACCAAGAGGCCCAGCCCTCCAAACCCTGGATTTGCAACATCCTCAAAGAACAGCAACGGGCCTTGAGCAGAATTGAGAAGGAAATACCCCCACCTGCCCTCAGCCGTTAAGTGGGCTTTGCTATTCACAAGGGCCTCTGGGTGTCCTGGCAGAGAGGGGAGATGGCACAGGCACCAGGTGCTAGGGTGCCAGGGCCTCCCGAGAAGGAACAGGTGCAAAGCAGGCAATTAGCCCAGAAGGTATCCGTGGGGCAGGCAGCCTAGATCTGATGGGGGAAGCCACCAGGATTACATCATCTGCTG
Seq A exon
TAACAACTGCTCTGAAAAGAAGATATTTTTCAACCTGAACTTGCAGTAGCTAGTGGAGAGGCAG
Seq C2 exon
GATACCTCCCTCAACAATGGGCATTCCTAGGGAGCATCATTAACAAGATTCCAGCTCTACTCCTTCCTGCTGAGGTTTGTCGCTTAAGAATCTGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135363-'0-2,'0-1,2-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCCAGAAGGTATCCGTGG
R:
AGCAGGAAGGAGTAGAGCTGG
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)