BtaEX0020544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:27034185-27036699:+
Coord C1 exon
chr2:27034185-27034386
Coord A exon
chr2:27035030-27035325
Coord C2 exon
chr2:27036183-27036699
Length
296 bp
Sequences
Splice sites
3' ss Seq
TACTGGGTCTCATGACACAGGTG
3' ss Score
4.93
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGAATCGCAACTGCTCAAGTTCTGAGTTTGCCTGTGAGGTTGGTGTGCGTCCACACAGAGGCTGTATCCCTAAATCGTGGGTTTGTGATGGCGAAGCAGATTGCCTTGATGCCCTTGATGAGCACCAGAATTGCACCAGAAGATCCTGCTTTGGAACAGAGTTCGTCTGTAACAATGGCTTGTGTATCCCCAACCACTTCAG
Seq A exon
GTGTGACCGGAACAATGACTGTGGTGACTACAGTGATGAGAGGGGCTGTGTGTACCCTACCTGCGATGAGACCCTTTTTACATGTCAGAACGGACTCTGCATTAATAAGGCCTATGTCTGTGATGGGGACAATGACTGTAAAGATAACTCTGATGAGCTGGAGCACCTGTGTCACACCCCAGAAACCACATGCCCCCCTCATCAGTTCAGGTGTGACAATGGGAACTGCATTGAGATGATGAAAGTCTGTAACAACTTCCCTGACTGCTCAGACAACAGTGATGAGAAAGGATGTG
Seq C2 exon
GCATTAATGAGTGCAATGACCCTACACTCAGTGGTTGTAACCAAAACTGCACAGACACCTTAACCAGTTTCTATTGTTCTTGTAACCCTGGTTACAAGCTGTTGTCTGACAAGAGGACTTGTGTTGATATTGATGAATGCGAGGAGACGCCCTTCGTCTGTAGCCAAAAGTGTGAGAACTTACCTGGCACTTACATCTGCAAATGTGCCCCAGGCTACATCCGTGAGCCAGATGGAAAGACCTGCCGGCAGAACAGCAACATCGAGCCTGATCTCATTTTTAGCAACCGTTACTATTTGAGAAATCTAACTGTCTATGGCCATTTATACTCCCTCATCTTGCAAGGACTGGGTAATGTTGTGGCATTGGATTTTGACCGAGTAGAAAAGAGATTGTACTGGCTTGATATAGAGAATAAAGTCATTGAGAGAATGTTTGTGAATACGACAAACAGGGAGACAGTCTTAAAGTACAATCTACCTGGTGCGGAAAGTCTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-'55-53,'55-52,56-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=63.2),PF0005713=Ldl_recept_a=PU(54.1=29.4)
A:
PF0005713=Ldl_recept_a=PD(43.2=16.0),PF0005713=Ldl_recept_a=WD(100=39.0),PF0005713=Ldl_recept_a=WD(100=37.0)
C2:
PF126622=cEGF=WD(100=13.9),PF146701=FXa_inhibition=WD(100=20.8),PF0005812=Ldl_recept_b=WD(100=23.7),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGTGTATCCCCAACCAC
R:
AGGCTCGATGTTGCTGTTCTG
Band lengths:
295-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development