BtaEX0020587 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004969 | LRRC14
Description
Bos taurus leucine rich repeat containing 14 (LRRC14), mRNA. [Source:RefSeq mRNA;Acc:NM_001102379]
Coordinates
chr14:1611803-1613725:-
Coord C1 exon
chr14:1613714-1613725
Coord A exon
chr14:1613241-1613372
Coord C2 exon
chr14:1611803-1612156
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTCTCTCGTGACAGGTG
3' ss Score
10.76
5' ss Seq
GAGGTCCGC
5' ss Score
2.95
Exon sequences
Seq C1 exon
CGCACAAGGAGG
Seq A exon
GTGATCGGTTGGTCTGTCCTCTCACAGCGAGGTATGAATCGTCCTCGCGAGATTTATCCTCAGGCAGAGCGAGACCGAGGGTTGACGTCCCGGGCTTCTCAGGAACCAGCGCCTTAAGGACTTGTGTATGAG
Seq C2 exon
GTGACCTCCTGCCTGGCCTAGCGCCATGCACACCCTCGTGTTCCTGAGCACACGGCAGGTGCTCCAGTGCCAGTCAGCTGCCTGCCAGGCCCTGCCCCTGCTGCCGAGAGAGCTCTTCCCCTTGCTGTTCAAAGTGGCCTTCATGGACAAGAAGACTGTAGTGCTGCGTGAGCTGGTACACACTTGGCCTTTCCCGCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGCCGGGCCCTGCTGCAGGAGCGGCCCAGCACAGAGAGCATGCAAGCTGTGATCCTGGGCCTGACTGCCCGGCTCCACACCCCGGAGACTGAGCCTGGCACGCAGCCCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004969_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.055
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development