BtaINT0087112 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004969 | LRRC14
Description
Bos taurus leucine rich repeat containing 14 (LRRC14), mRNA. [Source:RefSeq mRNA;Acc:NM_001102379]
Coordinates
chr14:1611803-1613372:-
Coord C1 exon
chr14:1613241-1613372
Coord A exon
chr14:1612157-1613240
Coord C2 exon
chr14:1611803-1612156
Length
1084 bp
Sequences
Splice sites
5' ss Seq
GAGGTCCGC
5' ss Score
2.95
3' ss Seq
TGAAGGGCACTTCCCTGCAGGTG
3' ss Score
6.99
Exon sequences
Seq C1 exon
GTGATCGGTTGGTCTGTCCTCTCACAGCGAGGTATGAATCGTCCTCGCGAGATTTATCCTCAGGCAGAGCGAGACCGAGGGTTGACGTCCCGGGCTTCTCAGGAACCAGCGCCTTAAGGACTTGTGTATGAG
Seq A exon
GTCCGCAAGAGCTGGGGCTCTGGGGCCAGTCTGCCACCCTTCCCAAGCTCGTTACCCGGGACCTTTGTCTGGCAAGGCCTAGGTCTTAGTTTCCTACCATTTTCAGGAAAGTGGCCTGAAGGCAGTTTTGAGGATGAGGTGCCTGGCACACAGTAAATCAGTAGCAGAGCTGTCATGCAGATACCTTGTGGTCTCAGGCATCTCTTTTGTGCTCCTTGTCAGCTTGGATATACCATTGACAGCCGCCTCTACCTATCTCAGGAGAGGTCCCTAGTTTGGGGTCTTTGAATCCCATGGGTTTGATACTTGTCCTCTTAATATGGTTTTCCAGGGAAGAGAGACATTTACACAGATGGCAAGGACACCGATGGGTTAGGTATTCTTTTTTCTGTAAATCTCCAGGGGTCTCCATGTCTGACAGTGCTCCTGGAAGATAGTACATGTTGAGGGCTTGGGTTACTCTAGTTCTTCAGACTCAGAGTTCACTGGGTTCTGGTTCGTTGTACTTGTCCTGCTGTTTATTAAACTGTATCTATAGTTTCAACTCCTCTTTGCTGTGCTGTGCAGAATCCAAGGGCAGCCTGCAGGAGCTTGTGAGGCGGCTGAGAGAGGGTGCTGTGATGCACCTTCCAGCCCCTGGGATTATCTCATCCCTCTAGTGCTTGGCCAGGGGTGGGAGGATGGCGGGTGGGGGTTGGCTTTTTCCTATATTTAAGAAGGGGAGGATCTCTTGATAAGTGGCTTTGTGATTTGGAAGGTCTGAAAAACAGATGGTGTGCCCTGCAGAGCAGCAGCCATCAAGAGCACACCGACACGGGCTGGTCATCTCTGGAGCCGTGCTGTTTACATGCTGCTTGGTGGCTTTGTCTCCCTAGAGAGGCCCCTCTGCTTCTCGGGGGCCAGGATGGGGGTGGCCTTGTTCTCCTTTCTCCTTTTTTCAGCCTATTGCGAAGTATCTAGCACTTGCTCGTCAGAGCCATGGTTCTTTGCTCTGTGCCAAGCACCAGGCTGAGCTTTCCCACTACCAGCATGGAGGGGGTGGGGCTGGAGTCTGTCCTCCCCACTGAAGGGCACTTCCCTGCAG
Seq C2 exon
GTGACCTCCTGCCTGGCCTAGCGCCATGCACACCCTCGTGTTCCTGAGCACACGGCAGGTGCTCCAGTGCCAGTCAGCTGCCTGCCAGGCCCTGCCCCTGCTGCCGAGAGAGCTCTTCCCCTTGCTGTTCAAAGTGGCCTTCATGGACAAGAAGACTGTAGTGCTGCGTGAGCTGGTACACACTTGGCCTTTCCCGCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGCCGGGCCCTGCTGCAGGAGCGGCCCAGCACAGAGAGCATGCAAGCTGTGATCCTGGGCCTGACTGCCCGGCTCCACACCCCGGAGACTGAGCCTGGCACGCAGCCCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004969:ENSBTAT00000006542:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.055
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCAGGAACCAGCGCCTTA
R:
CAGTCAGGCCCAGGATCACAG
Band lengths:
342-1426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development