MmuINT0092826 @ mm10
Intron Retention
Gene
ENSMUSG00000033728 | Lrrc14
Description
leucine rich repeat containing 14 [Source:MGI Symbol;Acc:MGI:2445060]
Coordinates
chr15:76710638-76713220:+
Coord C1 exon
chr15:76710638-76710927
Coord A exon
chr15:76710928-76712866
Coord C2 exon
chr15:76712867-76713220
Length
1939 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
TAAGACTCCCCCTCCTGCAGGTG
3' ss Score
8.99
Exon sequences
Seq C1 exon
TGCGCGGAGCTGGGCGAGGCTTGCTGGGCGAGGAAGGGTTGCAGGCCTTGGTAGTCGGGGAGGCGGATGAGCGGGGGCCGCGGGGCTGGGATTCGAGTCGAGCTGAGAGTCAAGCAGCCGTTAGTGGTCAGGGCACTTGGACGGCAGGTTCGACGGGGACTGGCGCTTGAAGACCACGGCTGAGGCGGATTCTCGGGAGGTGCCGCCGGCGCGCGGGGATGGGCCGCAAGCGAAGGGAGACCTAGGGGCGGGCGAGGCCGGTCTCGGCCTGTGGCTCCAGGCTCGCCCGG
Seq A exon
GTCAGTTGATGTTCCGGGCTTTTTGTTTTCTCCAAGGATCCGAGCGTGCGCGTCTGTATGCCGCAGAGACCGCTGTGTCCTGTGTGCAGTAGCATCACCCAGAAGCAATCCTTGCTTGGAGGCCAGGCGGGCTGCCACCGGTTCCTCTTATGACAGGTGTTTGGTTGGCTTGTCCTGTCAGTTAGGCAGTCCTATTATCTTAAGCTAGAGCCAGATCAAGGACAGTCACGCGGGGTTCCCCAGGGACGCGTGCCTTAAGGACTCGTAGGAGATGTTAGAAGCAAGCAAACCCTGGGCTTCATCAGTCTTTCTGGTCCCCAGTCTTGTCCCTTGCTGCGGCTTTGCGTAAGGCCTAGGCCCTGGTTTTCCATTCTGTTGTGGGCTGAGGACTGTAGCATAGTTCTGAGGGTAAGGTGTTTTGCCCACAGGAAGTCTACTGACCCAGGATAGCAAGAATCATTCAGGCTCAGGATCTTTTGTATGTGGCTTCTCAGCTGGAACGCTTTAGCAGTTTTGGCTTGGATCGTTATGAATCTCGTGAATTTAAGACATGGTTTCTCAGTGAAGAGGAGGTACCCGAATAGGAGACAAGGACCACAGAGGGTGAGAGTTGCTCTTCCTCAGGGATTTCTCTGCCTAGTTATACCCTAGAAATCCGCTATCTCTGGAGTTCAAACTCAGGGCCTTGGTCTCAGATGCTGCACACCATCTGTTCACAGGATCCTTTAAAAAACAAAAACAAAAAAAAAACCCCAGAGCCTGGCACTCACTAAGCTGTGTTAGACTTCTTTAACTCCAAAGGCACATCTACGTGGAGGGTCAGGATGTTAGGCTACTGGCTCTGGAGGAATCCTCTGTTGTCAGTCTGGTGGGAAGAGAGGTCTGGGATTTACTTCACTTTAGAAAATATTTACTTTCCCTAGTCGTAGGAAAATACACCATGTGCATGTGAAAGCTTCAGGTCAAAAGGGGGCACCTGCATCAGTTCCATGTGGCTGTGACATACCATGTTGGTTCTGGAAACCAGGCTGGGGTCTTTTGCAAGATCGGTAAATGCTCATAACTGCTGAACCATTTCTCCACCCCACCCTCCCACCCCCATTTTACAAGCAAACATGCAAATCTACTAGAACTCAATAGTGGGCTAGCCAGCCAGTAAGGTTCAGGGAGTCTTCTGTTGACTCCAGTGCTGGCTACAGAGCTGTGTCACCTGTATCCTGCTTTTACATAGGTTCTGTGGTCTGAAATCAGGTCCTCATGTTCAGTAAGAGCTATACAGAAAGGCGTCTCCCAGCCCCTTTTCTTCTTCTCTTTTCTTTCCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTAGGATGTCACTGTAAGGATAAACAGACTATAAATAGACTAGGTGCGCTTCGGACTCATAGATCTACCTCCCTCTTGCCTTCCTCTGTGCTGGAATTGAAGGTGTACAACTCCATGCCTAGCCCTTACTAGACTTCTGAGGAAGGATTTCTGAGTCATTGTCATTTGGGAGACCTAAAGTATCAGTGTTGGGCCCTGCAGAGCATGAGCTATTTCTTTTAACAGACAGGTCATTGACACAGCTGCACTATGTATGTTCTGCTCAACACTTTGTTTCCCCCATGTCTCCTGTCCACTCTGCACAGTGCTAAGTGCTTCCTAGGAATTGTTCCTGCCAAGTGTGATGGCACAGCATGTAATCCCAGAAGAGGCAGGAGGATTGCTACAAATTCAAGACAAGCCTGGGCTATACAGTGAGACATTGTCTCAAGCCAGACCTAGAAACTTATCTTTTGTGCATTTCTCCTCTATTAACTACCAACTCCATATCAGATACCTTGGTGGGCTTTGTACCACTGATAACTTGGGGAGGGTGTGGCCTGCTTCTGGCCCAGAGTTTGTCTAATTAAGACTCCCCCTCCTGCAG
Seq C2 exon
GTGGCTGTCTGCCCAGTCCAGCACCATGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCCTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCCCTGCTGCCCCGGGAACTCTTCCCTCTGCTCTTCAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGGCTGACAGCTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033728:ENSMUST00000127208:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.004
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGAGCTGAGAGTCAAGCA
R:
TTGTCCATGAAGGCCACCTTG
Band lengths:
345-2284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types