MmuEX0026927 @ mm10
Exon Skipping
Gene
ENSMUSG00000033728 | Lrrc14
Description
leucine rich repeat containing 14 [Source:MGI Symbol;Acc:MGI:2445060]
Coordinates
chr15:76710964-76712693:+
Coord C1 exon
chr15:76710964-76711083
Coord A exon
chr15:76711422-76711530
Coord C2 exon
chr15:76711851-76712693
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTTGTATGTGGCTTCTCAGCTG
3' ss Score
6.66
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GATCCGAGCGTGCGCGTCTGTATGCCGCAGAGACCGCTGTGTCCTGTGTGCAGTAGCATCACCCAGAAGCAATCCTTGCTTGGAGGCCAGGCGGGCTGCCACCGGTTCCTCTTATGACAG
Seq A exon
CTGGAACGCTTTAGCAGTTTTGGCTTGGATCGTTATGAATCTCGTGAATTTAAGACATGGTTTCTCAGTGAAGAGGAGGTACCCGAATAGGAGACAAGGACCACAGAGG
Seq C2 exon
TCGTAGGAAAATACACCATGTGCATGTGAAAGCTTCAGGTCAAAAGGGGGCACCTGCATCAGTTCCATGTGGCTGTGACATACCATGTTGGTTCTGGAAACCAGGCTGGGGTCTTTTGCAAGATCGGTAAATGCTCATAACTGCTGAACCATTTCTCCACCCCACCCTCCCACCCCCATTTTACAAGCAAACATGCAAATCTACTAGAACTCAATAGTGGGCTAGCCAGCCAGTAAGGTTCAGGGAGTCTTCTGTTGACTCCAGTGCTGGCTACAGAGCTGTGTCACCTGTATCCTGCTTTTACATAGGTTCTGTGGTCTGAAATCAGGTCCTCATGTTCAGTAAGAGCTATACAGAAAGGCGTCTCCCAGCCCCTTTTCTTCTTCTCTTTTCTTTCCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTAGGATGTCACTGTAAGGATAAACAGACTATAAATAGACTAGGTGCGCTTCGGACTCATAGATCTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033728-'3-3,'3-2,4-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCCTGTGTGCAGTAGC
R:
GGTGGGGTGGAGAAATGGTTC
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types