MmuEX0026927 @ mm9
Exon Skipping
Gene
ENSMUSG00000033728 | Lrrc14
Description
leucine rich repeat containing 14 [Source:MGI Symbol;Acc:MGI:2445060]
Coordinates
chr15:76541053-76543650:+
Coord C1 exon
chr15:76541053-76541357
Coord A exon
chr15:76541786-76541960
Coord C2 exon
chr15:76543297-76543650
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTAAGGTGTTTTGCCCACAGGAA
3' ss Score
8.12
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
AGCGCGCCCCGGCGCTGCGCGGAGCTGGGCGAGGCTTGCTGGGCGAGGAAGGGTTGCAGGCCTTGGTAGTCGGGGAGGCGGATGAGCGGGGGCCGCGGGGCTGGGATTCGAGTCGAGCTGAGAGTCAAGCAGCCGTTAGTGGTCAGGGCACTTGGACGGCAGGTTCGACGGGGACTGGCGCTTGAAGACCACGGCTGAGGCGGATTCTCGGGAGGTGCCGCCGGCGCGCGGGGATGGGCCGCAAGCGAAGGGAGACCTAGGGGCGGGCGAGGCCGGTCTCGGCCTGTGGCTCCAGGCTCGCCCGG
Seq A exon
GAAGTCTACTGACCCAGGATAGCAAGAATCATTCAGGCTCAGGATCTTTTGTATGTGGCTTCTCAGCTGGAACGCTTTAGCAGTTTTGGCTTGGATCGTTATGAATCTCGTGAATTTAAGACATGGTTTCTCAGTGAAGAGGAGGTACCCGAATAGGAGACAAGGACCACAGAGG
Seq C2 exon
GTGGCTGTCTGCCCAGTCCAGCACCATGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCCTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCCCTGCTGCCCCGGGAACTCTTCCCTCTGCTCTTCAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGGCTGACAGCTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033728-'2-4,'2-1,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.004
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTCGAGTCGAGCTGAGA
R:
ACAAGTGTGTGCATGGTGCTG
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types