MmuINT0092825 @ mm9
Intron Retention
Gene
ENSMUSG00000033728 | Lrrc14
Description
leucine rich repeat containing 14 [Source:MGI Symbol;Acc:MGI:2445060]
Coordinates
chr15:76541394-76541960:+
Coord C1 exon
chr15:76541394-76541513
Coord A exon
chr15:76541514-76541851
Coord C2 exon
chr15:76541852-76541960
Length
338 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTTT
5' ss Score
2.28
3' ss Seq
TTTTGTATGTGGCTTCTCAGCTG
3' ss Score
6.66
Exon sequences
Seq C1 exon
GATCCGAGCGTGCGCGTCTGTATGCCGCAGAGACCGCTGTGTCCTGTGTGCAGTAGCATCACCCAGAAGCAATCCTTGCTTGGAGGCCAGGCGGGCTGCCACCGGTTCCTCTTATGACAG
Seq A exon
GTGTTTGGTTGGCTTGTCCTGTCAGTTAGGCAGTCCTATTATCTTAAGCTAGAGCCAGATCAAGGACAGTCACGCGGGGTTCCCCAGGGACGCGTGCCTTAAGGACTCGTAGGAGATGTTAGAAGCAAGCAAACCCTGGGCTTCATCAGTCTTTCTGGTCCCCAGTCTTGTCCCTTGCTGCGGCTTTGCGTAAGGCCTAGGCCCTGGTTTTCCATTCTGTTGTGGGCTGAGGACTGTAGCATAGTTCTGAGGGTAAGGTGTTTTGCCCACAGGAAGTCTACTGACCCAGGATAGCAAGAATCATTCAGGCTCAGGATCTTTTGTATGTGGCTTCTCAG
Seq C2 exon
CTGGAACGCTTTAGCAGTTTTGGCTTGGATCGTTATGAATCTCGTGAATTTAAGACATGGTTTCTCAGTGAAGAGGAGGTACCCGAATAGGAGACAAGGACCACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033728-Lrrc14:NM_145471:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGCGCGTCTGTATGC
R:
CCTCTGTGGTCCTTGTCTCCT
Band lengths:
222-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: