HsaINT0096636 @ hg19
Intron Retention
Gene
ENSG00000160959 | LRRC14
Description
leucine rich repeat containing 14 [Source:HGNC Symbol;Acc:20419]
Coordinates
chr8:145743363-145745438:+
Coord C1 exon
chr8:145743363-145743425
Coord A exon
chr8:145743426-145744998
Coord C2 exon
chr8:145744999-145745438
Length
1573 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
AACTGCTGACTTTGTTTCAGGCA
3' ss Score
6.98
Exon sequences
Seq C1 exon
CCGGGCGGGGAGCGGCGGACGGTCTAGGCGGGGCTGGAGGCGGTGGCTGCGGTTGCGGGACCG
Seq A exon
GTGAGCGCGGGCGGCCGGGGGGGTGTCTGAGCGGGGCGGCGCACGCCCCTGGCCCTGCCTGGCCTCAAGGGGCGGGGCACCGGTCGCTCGGGGCGGCCTGGCCGAGGGAGGCAGTGGCTGCATTTGGGAGCCCGGGGCCGAGGCCGGGAGCCTGGGAGGTGCCACCGCGGGCCGGGAAGGACTGGGAGTCCCCGGGCCGGTCGGAGCGGCGTCAGGCCCTGGTGGGAGACGCATCCGACCTGGAGGAGCAGGCCCCGCTCGGGAGGCGAAAGAGCGGAGGGTCCAGCGCCTCCCGCGGCTCGAGGCCCGGAGGAGCCGGGCGGGGGCGTCTTCGCGAAACGCAGGCGACCGAGGACCGTCGCGTTCCCTGCGGCCGGCGGGAGGGGAGGGGGCGTCGCACGGAGGTGCCTGCCTCCCTTGGTGGGCAGGCCGTCTGCTTTGGTGTTCTCCCGTGACAAGTGCTCGGTTGGTCTGTCCTGTCAGAGCGAGTATGATCGTTGAGATCTGTCCACCGGCAGAACTAGGCCGAGGGTTGGTGTCTGGGACTTTTCAGGAACCGGTGCCTTAAGGACTTACTTGTATGTGGAAAAGTCGACAAAAAGAAGGGCCTTGGGGCCAGAGTGTCTTCCCCGGCCCCCTTCCCTGGCTTGTCACTCAGGCTGTGACCTTGGGCCAGGCCGAGGCCTTCATTTTCTAATCTGTCACAGGGAGATGGCTGCGATTTAGTTTTGAGGATGCTACAGGCAGCAGCAGGGCTGGCACCCTGTGTCACAGGTACCTTGTGGCCTTGGGAGTGTTTGTGCATCTCTGCAGCTTGGGTGCTGCTGAGGCAGCTTTCTTTGCCTTGTCTGAGCAGTCTGTAGCTTTGCACCTTCTGAATCCCACATACTTAAGACTTGGTCTTTCCACAGTGGCTCTCCAGGGAAGAGGGAGAGGTTTAGGCCAGTGGTAAGGGCCAACAAAGGTGAGGGTTGCTTTCTTTCGGGGTCTCCGTGCTTGGTGACGCTCTGGAGAATAGTAGCTTTTGCGGGGGCTTGTATTTTATAGGCTACATCATCTGGACTCGGTGTTCCCTGGGTCTCGGTCTTTTCAACCTGCCTTGTTGCTTATGAAGCTGCTTCTGTGCTTCCAGCTCTTTGGTGTTTTGTGGAGTCCAAGTGTAGCCCTGGAGAGCATCTGTGAGGAGAGGGGAGGGAAAGGTGATTTGGCTGCTTGACTCCTTAGAGTGTCCCGTCAATACTAATGCTGATGAAGGTTGGTGGGGAGAGTCCTGGGCTTTATTCAGGTTTCGAAGAAGGTTTTGTGAAGCAGCTTTGTAATTTGAGAGGCCTGAAGTACCCATGGGGGGCCCTGCAAGGCAACAGGCATCTGTCAAAAGCATACCCAAGCAAGCGAGTTGTTGACGATGCCACACTGCTTGACGCTTAGTTTCTCTAAAGAGATCCTGTGCATCTGGAGGGCTGGGGCTGAGTTGTGAGTTTGTCTGCCAGTTCACTGCACCCAGCCCAGCGCTAGGCATCTAATAGGTGCTTCTCTGTGCCATGGCCACTGCTAACTGCTGACTTTGTTTCAG
Seq C2 exon
GCACTATGCTGGGCCTTCCTACCACTTGTGTGTGGCTTGGTAGTGGCCTAGGGTCTCTCCTCCCTGCTGAAGTCCCTCTCCTGCAGGTGGCCGTCTGCCCGGCCCAGCACCATGCACACGCTTGTGTTCTTGAGCACACGGCAGGTGCTGCAGTGCCAGCCAGCTGCCTGCCAGGCCCTGCCCTTGCTGCCACGCGAACTCTTCCCCCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGTGGTACTGCGCGAGTTGGTACACACGTGGCCCTTCCCGCTGCTCAGTTTCCAGCAGCTGCTACAGGAGTGTGCCCACTGCAGCCGTGCCCTCCTGCAGGAGCGGCCTAGCACTGAGAGCATGCAGGCTGTTATCCTGGGGCTGACTGCCCGGCTCCACACCTCAGAGCCTGGGGCCAGCACACAGCCCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160959-LRRC14:NM_014665:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAGGCGGGGCTGGAG
R:
CAGCTGCTGGAAACTGAGCAG
Band lengths:
345-1918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)