RnoINT0086803 @ rn6
Intron Retention
Gene
ENSRNOG00000016128 | Lrrc14
Description
leucine rich repeat containing 14 [Source:RGD Symbol;Acc:1560202]
Coordinates
chr7:117773948-117777677:+
Coord C1 exon
chr7:117773948-117774095
Coord A exon
chr7:117774096-117777323
Coord C2 exon
chr7:117777324-117777677
Length
3228 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TTAAGATTCCCCTCCTGCAGGGG
3' ss Score
7.6
Exon sequences
Seq C1 exon
GTGTTTTGTATGCGGCTTCTCAGCTGGAACACTTTGGCAGTTTTGGCTTGGATCTTTGTGAATCCTGTGAATTTAAGACCTGGTGTCTCTGTGCAGTGGTTTCTCAGTGAAGAGAAGGTACCCGAATAAGAAGCAAGGACCACAGAGG
Seq A exon
GTGAGAGTTGCCTTTCCTCAGGGGTTTCTGTGCCTAATTACACCTTATAAAACTGTTGCCTCTGGAGTTTGAACTTAAGGCCTTGGTCTCAGAGGCTGCACACCATCTGTAGTCAGGATCCTTTTTTGAAAAAACAGAACCTGGCACTTGACTAAGCTGTGTCAGACTTCCTTAAATCCAAGGGCATATCCATGTGGAGGGTTAGGAGGTGGCTACTGGCTCTGAGGGAATTCTCTGTTGTGGGTCTGATGGGAAGAGAGGTCTGGGATTTATTTCACTTTAGAAAATATTTACTTTCCTGTTTTTGTACATGTATATATCATGTGCATGTAAACGCCCTCTGGTCAAAAGAGGGCATCTGCATCAGTTACATGAGGCTGTGACATACCACGTTGGTTCTGAAAACGAAACTAGGGTCTTTTGCAAGATTAGTAAATGCTCTTAACTGTTGAACCATCTCTCCACCCCCACTCCCACCCCACCCCCATTTTACAGCAAACATCCAAATCTGCTGGAACTCAATATTGGGCGGCCAGCTGGTAAGCTTCAAGGAGCCTTCTGACTCCAGTGCTGGGGTTACAGAGCTGTGGCACCAGTATCCTGCTTTTACATAGAGTCAGAATCGAGCCCTCACGCTTGGCAAGCACTATACAAAAAGGCATTTCCCAGCCCCCTTTTTTTCTCTTCTCTCTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTTTCTCTTTCTCTCTTTTTTTCTTTTTTGAGCTAGGATGTTACTGTGTAAGGATAAACAGACTAGGTGTACAACTCCATGCCTAGCCCTTACTTTGCTTCTGAGGAAGGGTTCCTAAGTCATTGTGATTTGGCAGGCTTCAAGTATCGGTGTTGGGCCCTGCAGGGCAGCAGCTTATTTATGAGAAGGTCACACATAAACAAACATATTATTGACAGTGCTACGCTATGTGTGTTCTGCCTGACACTTTGTTTACCCTGTGTCTCCTGTCCACTCTGCATCGTGCTGAGTTCTTATAGGAATGGCTCCTGCCAAGTGTGATGGCACATGCTTGTAATCCCAGAAGAGGCAGGAGGATTGCTACAAACTCAAGATAAGCCTAGACTACAGGGAGACTATCTCAAGGCAAACAAAGAAACTTTCCTTTGTGCAACTCTTCTCTACTAACTGCCAACTCCATGTCAGATACCTTGGTGGGCTTTGTACTACTGACAACTTGGGGAGGTGTAGATGAATTGAAGCAATTTGCTCAGTGGCTGTGTCACCACGATTTGAGCAACTCCATTGATGCTCAATTTCTTCTTCAAGTCTAAGGGGTCCTGTCAGGGGCAGACAGGTCTCTAGTCAAATGATCTAGACGAAGAAATGTCCATAAACGGGTTATTCTGTGGACTTCTGATGCCCACAGAATCGTCCCAGTTCCTTATGTTGGGGTGGATGGTTCTGGTTATTCTAAGAACTGTGGATATGTTTTCTTTTAAGGGATACTATACAAATGTAGCTTTGGGCAGGGGGAACTAGAGAATTTAAACTCAGGGATTGCTACCTTTCCTTTCCTCTTTTCTATCCTTCTTAGTTTAAAAAAAAGGGGGGGGGTGATATAGTAATACATAGAAGTTAGAGAAATAGACAAACAGGGATAGATTAGCAAACTTACTCTTAAACAAAATTTTACAGCTATATCTTACATTGATAGAAATGTTTGTAATTGATACAAAGTTGAAGCTGCAATCTTTTCATTGGTATAGAATGCATTTTACACAAATGCGAGGTTTTCATTGGTATACTTTCTTATTGATTTATAATTGAGATTAATATTGCTACTTTAACATAAGCATTGTGCCTTCACTATGCATCTAAGAATACAAGTCTTAGACCCAGTCCTATAACTGCTATTATACATTATTTTTAGTTGATTAACCAGTACCAGCTAAAGACCAGATAGCAAAGTCATGGTTCTGAGTCAGTTTAGATGGGTTTTGGAAATACTTCGATTAGAGAGGGCCAACGGTAGTCTATGCTTAACAGTTCAGAAACGCCTATGTAGATAGGAAATCTTCAAGGGCGTCAGAAGTACACAGAATAACCCATTTATGGACATTTCTTCGTCTAGATCATTTGACTAGAGACCTGTCTGCCCCTGACAGGACCCCTTAGACTCGAAGAAGAAATTGAGCATCAATGGAGTTGCTCAAATTGTGGTGACACAGCCACTGAGCAAATTGCTTCAATTCATCTACAGACAAAACACTGTCCAGAAAAGGACAAATTATGCAGAATAGTTGACTGATAATCTCTGCCAAAGCAGGGTGATCAGCCCTTCAAAATCTACATTACAAAGGTCTGTCAGATGATCCTGGGCCAGAAGGCTGAAGACTGATGCTCCGACATATTAAGGAATAGGGGGACTGTCCAGGTGGTCAGCAGTCTCTATAAATTGGCTAAGCTTGGAAGCCATGTTTTGTGCTTCCCATATTTTCAGGTAATATTAATCATTCTTGGATTTCTGATGTGGTTGGAGACTGGTAGTCTCATAGACAACACAAGCAGTTTAGTATTGAGAAAGATGATAAATCTGTTAGGGTGGTTTTCAGGTGGCATAGGATCTAGAACCAGGATATAGTCAGGTATAGTATTTAGTATAGATGACATGGTTAATGAACAAAATTGATGGACTGGGTGATGAGTGTATTGTTGGTTTTATAAATTACAGAATGGTAATAATACTTAGTTCACATATGTATAGGGAAAAGGTTTTTTAACTGGACAAAAAGGAAATGTTGTGGTTTGCCTTGGAGTTCTCTCTGAATTTATAAAATAAAGGCAAGAGCTCGAGATTTGGACAGAGGGAGGAGTCGGGAGCAAGAGGGGAGGAGTCAGGAGGGGAGGAGCCAGGAGGGGGAGGAGTCAGGGTAGGAGAAAGGAAAGAAGTGAGGAGAGAGTTGTCGAGGGAAAAGGAGAAGCTAGAGACCAGGCAAATAAAAGGTACAAGGGATGAGGGATTTGGGAGCTAGGAATAGGACAGTGTAGGGTGGATCTGCCCAATCTAGACGCTAGATTGTTTTCATATTAATTGAGTTGAGTTTTCTTTGTACTGGCCGACTTGGGTTGGAGAGAAAACTGCAACAAACTGCAACAGGGAGGGTGTGGCCTGATACTGGCCCAGGCTTTGTCTTCCCTAATTAAGATTCCCCTCCTGCAG
Seq C2 exon
GGGCCTGTCTGCCCAGTCCAGCACCATGCACACGCTTGTGTTCCTCAGCACACGCCAGGTGCTTCAGTGCCAGCCAGCTGCCTGCCAGGCCTTGCCCCTGCTGCCCCGAGAACTCTTCCCTCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGCCGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTCCTCAGTTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAACGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGACTGACCGCCCGGATACATGCTCGAGAAGCAGAGGCTGGCACACAGCCCGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016128:ENSRNOT00000021673:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]