RnoEX0050820 @ rn6
Exon Skipping
Gene
ENSRNOG00000016128 | Lrrc14
Description
leucine rich repeat containing 14 [Source:RGD Symbol;Acc:1560202]
Coordinates
chr7:117774534-117777677:+
Coord C1 exon
chr7:117774534-117774634
Coord A exon
chr7:117776463-117776603
Coord C2 exon
chr7:117777324-117777677
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCAAAATCTACATTACAAAGGTC
3' ss Score
2.49
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTCTTAACTGTTGAACCATCTCTCCACCCCCACTCCCACCCCACCCCCATTTTACAGCAAACATCCAAATCTGCTGGAACTCAATATTGGGCGGCCAGCTG
Seq A exon
GTCTGTCAGATGATCCTGGGCCAGAAGGCTGAAGACTGATGCTCCGACATATTAAGGAATAGGGGGACTGTCCAGGTGGTCAGCAGTCTCTATAAATTGGCTAAGCTTGGAAGCCATGTTTTGTGCTTCCCATATTTTCAG
Seq C2 exon
GGGCCTGTCTGCCCAGTCCAGCACCATGCACACGCTTGTGTTCCTCAGCACACGCCAGGTGCTTCAGTGCCAGCCAGCTGCCTGCCAGGCCTTGCCCCTGCTGCCCCGAGAACTCTTCCCTCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGCCGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTCCTCAGTTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAACGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGACTGACCGCCCGGATACATGCTCGAGAAGCAGAGGCTGGCACACAGCCCGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016128-'5-12,'5-11,6-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCAATATTGGGCGGCCA
R:
CAGCTGCTGGAAACTGAGGAG
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]