Special

BtaEX0020861 @ bosTau6

Exon Skipping

Description
lymphotoxin beta (TNF superfamily, member 3) [Source:HGNC Symbol;Acc:HGNC:6711]
Coordinates
chr23:27529856-27530755:+
Coord C1 exon
chr23:27529856-27530017
Coord A exon
chr23:27530436-27530487
Coord C2 exon
chr23:27530684-27530755
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTGTGACCCCACCCACTCAGGTA
3' ss Score
5.43
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATGGGGGAACGGGGGCTGGAGGGCCGGGGTAGGAGGCCCCAGAGGAAAGGATGGCTGCTGCTGGCTGTGGCAGGAGTCAGTTCCCTGGTGACCCTCCTGCTGGCCGTGCCCATCACTGTTGTGGCTGTGCTGGCCTTGGTGCCCCAGGAGCAGGGAGGATTG
Seq A exon
GTAACAGGGACGGCTGACCCAGGCACCCAGGCACCTGCCCATCAGCGATTTG
Seq C2 exon
AGTCCGGGGAGCTGCCCGAGGAGGACTCAGAAACTGATCTCAGCCCTAGGCTCCCAGCTGCCCATCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020674-'0-4,'0-1,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.204 A=1.000 C2=0.640
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGCAGGAGTCAGTTC
R:
AGTTTCTGAGTCCTCCTCGGG
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development