BtaEX0020861 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020674 | LTB
Description
lymphotoxin beta (TNF superfamily, member 3) [Source:HGNC Symbol;Acc:HGNC:6711]
Coordinates
chr23:27529856-27530755:+
Coord C1 exon
chr23:27529856-27530017
Coord A exon
chr23:27530436-27530487
Coord C2 exon
chr23:27530684-27530755
Length
52 bp
Sequences
Splice sites
3' ss Seq
CTGTGACCCCACCCACTCAGGTA
3' ss Score
5.43
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATGGGGGAACGGGGGCTGGAGGGCCGGGGTAGGAGGCCCCAGAGGAAAGGATGGCTGCTGCTGGCTGTGGCAGGAGTCAGTTCCCTGGTGACCCTCCTGCTGGCCGTGCCCATCACTGTTGTGGCTGTGCTGGCCTTGGTGCCCCAGGAGCAGGGAGGATTG
Seq A exon
GTAACAGGGACGGCTGACCCAGGCACCCAGGCACCTGCCCATCAGCGATTTG
Seq C2 exon
AGTCCGGGGAGCTGCCCGAGGAGGACTCAGAAACTGATCTCAGCCCTAGGCTCCCAGCTGCCCATCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020674-'0-4,'0-1,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=1.000 C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGCAGGAGTCAGTTC
R:
AGTTTCTGAGTCCTCCTCGGG
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development