BtaEX0020879 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44384000-44391701:-
Coord C1 exon
chr29:44391573-44391701
Coord A exon
chr29:44387771-44387890
Coord C2 exon
chr29:44384000-44384165
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTTGATTCCCTACAGACA
3' ss Score
10.38
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ACCTGAACGAGTGCGCAAAGCCCCACCTGTGCGGCGACGGCGGCTTCTGCATCAACTTTCCGGGACACTACAAGTGCAACTGCTACCCCGGCTACCGGCTTAAAGCCTCCAGACCGCCCGTGTGCGAAG
Seq A exon
ACATCAATGAGTGTGACTTCCCTGCAGCCTGCATTGGGGGTGATTGCATCAACACCAATGGCTCCTATCGATGTCTCTGTCCCCAGGGGCATCGGCTGGTAGGCGGCCGGAAATGCCAAG
Seq C2 exon
GTGGAGCAGCCCCACCACAAGAAGGAGTGCTACCTTAACTTCGATGATACCGTGTTCTGTGACAGTGTTCTGGCCACCAACGTCACCCAGCAGGAGTGCTGCTGCTCGCTGGGGGCTGGCTGGGGAGACCACTGCGAGATCTATCCCTGCCCAGTCTACAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747_MULTIEX1-4/13=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0068312=TB=PU(86.0=64.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAACTTTCCGGGACACT
R:
GCTGTAGACTGGGCAGGGATA
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development