MmuEX0027272 @ mm9
Exon Skipping
Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5753633-5755674:+
Coord C1 exon
chr19:5753633-5753755
Coord A exon
chr19:5753929-5754048
Coord C2 exon
chr19:5755546-5755674
Length
120 bp
Sequences
Splice sites
3' ss Seq
CAAACCATAATCTCCCACAGACA
3' ss Score
5.92
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG
Seq A exon
ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG
Seq C2 exon
ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940-'18-22,'18-20,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTGAGGCTGGGAAAGTG
R:
CTCACACCCATGCTGGTCCT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: