GgaEX0015299 @ galGal4
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37219053-37221065:-
Coord C1 exon
chr5:37220943-37221065
Coord A exon
chr5:37220689-37220814
Coord C2 exon
chr5:37219053-37219175
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCCTCATGTGCTTACGCAGACA
3' ss Score
7.1
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
ATGTGGACGAGTGCCTGGTGGAGAGAACCTGTGCCCATGGACAGTGTATCAACCTGGATGGCTCTTTCCGATGTTCCTGCTACCGGGGCTATGAGGTGGCACCCGATGGGAAGAGTTGTGAAG
Seq A exon
ACATTGACGAGTGCACAGCCCAGGCTGCCTGTCCCTCCAGACTCTGCCTCAACACTGAGGGCTCCTACTCCTGCATGGCTTGTGATGCTGGCTACACCGTTTCTAGAGATGGCAGCACATGTGAAG
Seq C2 exon
ATGTGGATGAATGTGCAGACCTTGCTATTCAGTGCCTGGGGGGAGCATGCCGGAACACACTGGGCTCCTACGAGTGCCACTGCCAGGCTGGATTCGAGCTCATCAATGGCACCGTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258_MULTIEX1-3/7=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=FE(23.2=100),PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF062476=Plasmod_Pvs28=FE(33.3=100),PF0764510=EGF_CA=WD(100=68.3)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGTGCCTGGT
R:
GGTGCCATTGATGAGCTCGAA
Band lengths:
236-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]