MmuEX0027256 @ mm10
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:84792957-84794066:-
Coord C1 exon
chr12:84793944-84794066
Coord A exon
chr12:84793619-84793744
Coord C2 exon
chr12:84792957-84793082
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACTCAATGGCCTGTTTCAGATG
3' ss Score
5.71
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATGTCAATGAGTGTCTGACCCCTGGGATATGTACCCATGGAAGGTGCATCAACATGGAAGGCTCCTTTAGATGCTCCTGTGAGCCGGGCTATGAGGTCACCCCAGACAAGAAGGGCTGCCGAG
Seq A exon
ATGTGGACGAGTGTGCCAGCCGAGCCTCGTGCCCCACCGGCCTCTGCCTCAACACGGAGGGCTCCTTCACCTGCTCAGCCTGTCAGAGCGGGTACTGGGTGAACGAAGATGGCACTGCCTGTGAAG
Seq C2 exon
ACTTGGATGAATGTGCCTTCCCTGGAGTCTGCCCCACAGGCGTCTGCACCAATACTGTAGGCTCCTTCTCCTGCAAGGACTGTGACAGGGGCTACCGGCCCAACCCCCTGGGCAACAGATGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'35-32,'35-30,36-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=PD(6.4=19.0),PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF062476=Plasmod_Pvs28=PD(21.7=23.3),PF0764510=EGF_CA=WD(100=95.3)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAATGAGTGTCTGACCCCT
R:
ATCTGTTGCCCAGGGGGTT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types