DreEX0005674 @ danRer10
Exon Skipping
Gene
ENSDARG00000099137 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:49028916-49031477:-
Coord C1 exon
chr18:49031358-49031477
Coord A exon
chr18:49029914-49030033
Coord C2 exon
chr18:49028916-49029035
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTTCTTCTGTTCCAGATG
3' ss Score
10.7
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
ATATCGATGAGTGCCGTCAGACTCCCGATCTGTGTGTTAACGGTCGCTGTGAGAATACGATGGGAAGCTACAGCTGTTCCTGTCGCCCTGGATTCAGACTGGAGGAAAACATCTGCAAAG
Seq A exon
ATGTGAACGAGTGTGAAAATGAGCTTCAGTGTCCAGGAATGGAGTGTGTGAACTCGGTCGGGTCTTTCAAGTGTGTGTCCTGTAAGCCGGGATTTCAGCTTCTTGATGGCCAGTGCCAAG
Seq C2 exon
ATGTAGACGAATGCAGTCGTACGCCGAGGCGCTGCACTAACGGTCAGTGTAAAAACACTCCGGGCAGCTTCAGATGTGTGTGTGACGTGGGTTTCCACCTCCAGGATGGCGTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099137_MULTIEX1-7/8=6-8
Average complexity
S
Mappability confidence:
75%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
ENSDART00000160702fB503
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGATGAGTGCCGTCAGACT
R:
CTGTGCAGACGCCATCCTG
Band lengths:
238-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]