DreEX6012174 @ danRer10
Exon Skipping
Gene
ENSDARG00000035682 | ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060526-130]
Coordinates
chr5:36967782-36970047:+
Coord C1 exon
chr5:36967782-36967904
Coord A exon
chr5:36968107-36968229
Coord C2 exon
chr5:36969928-36970047
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTGTCTCCCCACAGACA
3' ss Score
12.17
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
ATATCGATGAGTGCAAGAAGCACGGTGTGTGTCTAAACGGCCGTTGCGAGAACTTGGCAGGATCTTATCGATGTCTGTGTAATGAGGGCTTTCTGCCCGAGGCTAACAGGAAAGGCTGCAGAG
Seq A exon
ACATCAATGAGTGTCAGGATAACCGGTTGTGTGCTAATGGTCACTGCATCAACACTGACGGGTCATTTCGCTGCCAGTGTTATGCTGGTTATCAGCCTACGCAAGAAGGAAGCCATTGTGAAG
Seq C2 exon
ACATAAACGAGTGTAAACGAGCTGCCAATTGTCAGCGAGGGCGCTGTATCAACACGATGGGCTCATACCGCTGCGAGTGCCAGAAAGGATACACGCTCGAGAATGGGCGCCACTGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035682-'18-24,'18-23,19-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGCACGGTGTGT
R:
CAGTGGCGCCCATTCTCG
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]