BtaEX0020880 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004757 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:50185187-50186343:+
Coord C1 exon
chr18:50185187-50185318
Coord A exon
chr18:50185403-50185528
Coord C2 exon
chr18:50186218-50186343
Length
126 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTTCTGTACCCTCAGACG
3' ss Score
6.52
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GTCCCTCTGCAGGCGAGTGTCAACGCAATCCCCAGGTCTGCGGCCGTGGACGGTGCATCCCTCGGCCCAGTGGCTACACCTGCGCTTGCGACTCCGGTTTCCGGCTCAGTCCGCAGGGCACACACTGCATCG
Seq A exon
ACGTGGACGAATGTCGCCGCGTTCCCACTCCTTGTGCTCCCGGACGCTGCGAAAACACGCCAGGCAGCTTCCGTTGCGTGTGCGGGCCGGGCTTCCGAGCCGGCCCGCGGGGTACGGAGTGTCTGG
Seq C2 exon
ACGTGGACGAGTGCCACCGCGTGCCGCCACCTTGTGACCGTGGGCGCTGCGAGAACACGCCAGGCAGCTTCCTGTGCGTGTGCCCCGCGGGGTACCAGGCTGCACCCCACGGAGCCAGCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004757-'24-24,'24-23,25-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=82.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTCTGCAGGCGAGT
R:
GTGGGGTGCAGCCTGGTA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development