MmuEX6009240 @ mm10
Exon Skipping
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:27325678-27326823:-
Coord C1 exon
chr7:27326692-27326823
Coord A exon
chr7:27326487-27326612
Coord C2 exon
chr7:27325678-27325803
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGCTTGCTCTGTGTCCCCAGACA
3' ss Score
8.48
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GTCCCTCTTCCAGCATGTGTCAGCGAAATCCCCAGGTTTGTGGTCCTGGACGCTGCGTTCCTAGGCCAAGCGGCTACACTTGTGCGTGCGACCCAGGTTTCCGGCTCGGCCCCCAGGGCACTCGCTGCATTG
Seq A exon
ACATAGATGAATGTCGCCGCGTCCCTACACCCTGTGCTCCTGGGCGTTGCGAGAATACACCAGGCAGCTTTCGCTGCGTGTGCGGCACGGGCTTCCAAGCAGGCCCGCGGGCTACAGAGTGCCTGG
Seq C2 exon
ATGTGGACGAGTGCCGCCGCGTGCCGCCGCCGTGTGACCGCGGGCGCTGCGAGAACACGCCAGGCAGTTTCCTATGTGTGTGTCCCGCCGGGTACCAGGCAGCACCGCACGGAGCCAGCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488-'28-28,'28-26,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=82.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTCTTCCAGCATGTGTC
R:
GTGCGGTGCTGCCTGGTA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types