BtaEX0020882 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004757 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:50184254-50185318:+
Coord C1 exon
chr18:50184254-50184403
Coord A exon
chr18:50184529-50184636
Coord C2 exon
chr18:50185187-50185318
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGACACCCCTTCTTTACCAGGCT
3' ss Score
7.54
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
AGGGTTTTCGGGAGATCTGCCCAGCCGGCCCTGGCTACCATTACTCGGCCTCCGACCTCCGCTACAACACCAGACCCCTAGGCCAGGAACCACCCCGAGTGTCCCTCAGCCAGCCCCGTGCCCCACCTTCCACCTCTCGACCACCCTCAG
Seq A exon
GCTTTCTGCCCACTCATCGCCCAGAACCTCGGCCTGAGCCCCGGCCAGGCCCTGAGCTTCCCCTGCCTAGCATCCCTGCCTGGACTGGTCCTGGGATCCCTGAATCAG
Seq C2 exon
GTCCCTCTGCAGGCGAGTGTCAACGCAATCCCCAGGTCTGCGGCCGTGGACGGTGCATCCCTCGGCCCAGTGGCTACACCTGCGCTTGCGACTCCGGTTTCCGGCTCAGTCCGCAGGGCACACACTGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004757_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.620 A=0.986 C2=0.108
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=9.8)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=82.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCGGGAGATCTGCCCAG
R:
CGGAAACCGGAGTCGCAAG
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development