RnoEX6001814 @ rn6
Exon Skipping
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84139017-84140020:-
Coord C1 exon
chr1:84139871-84140020
Coord A exon
chr1:84139598-84139741
Coord C2 exon
chr1:84139017-84139148
Length
144 bp
Sequences
Splice sites
3' ss Seq
AGGTGCTCGCTCTTTACTAGGTT
3' ss Score
6.14
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
AGGGTTTTCGGGAGATCTGTCCAGCTGGCCCTGGTTACCACTATTCAGCTTCTGACCTCCGCTACAACACCAGACCCCTAAACCCGGATCCACCTCGAGTGACTTTCAATCAGCCACGTGCTCCACCTGTCACTCTTAGGCCACCCACAG
Seq A exon
GTTTTCTGCCCACTCGTCGACCTGAGCCCCGTCCTGACCCTGGGCCACAGCCTGAACTCCGGCCTCGACCTGAACCCCAGCCTCGGCCTGAATTTCCCCTGCCCAGCATCCCTGCTTGGACCGGTCCAGAGATTCCTGAATCAG
Seq C2 exon
GTACCTCTTCCAGCATGTGTCAGCGAAATCCCCAGGTTTGTGGTCCTGGACGCTGCGTTTCTCGGCCAGGCGGCTACACCTGTGCCTGCGACCCAGGTTTCCGGCTCGGCCCCCAGGGCACTCGCTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871-'19-16,'19-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=1.000 C2=0.178
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=9.8)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=82.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGTTACCACTATTCAGC
R:
CAATACAGCGAGTGCCCTGG
Band lengths:
255-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]