BtaEX0021131 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046775 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr11:106124676-106126073:-
Coord C1 exon
chr11:106125942-106126073
Coord A exon
chr11:106125033-106125323
Coord C2 exon
chr11:106124676-106124774
Length
291 bp
Sequences
Splice sites
3' ss Seq
CGGCCTCGGCTCTCGAGCAGGTC
3' ss Score
4.25
5' ss Seq
GACCTTGGC
5' ss Score
-17.08
Exon sequences
Seq C1 exon
GCGGCCGACAGACATAACCTGCTGCGGCCCGAGACCGTGGAGAGCCTGTTCTACCTGTACCGCCTCACGGGCGACCGAAAGTACCAGGACTGGGGCTGGGAGATCCTGCACAGCTTCAACACCTACACGCGG
Seq A exon
GTCCCCTCGGGCGGCTATTCTTCCATCAGCAACGTCCAGGACCCCCGCCACCCCCAGCCCAGGGACAAGATGGAGAGCTTCTTTCTGGGAGAGACGCTCAAATACCTGTATCTGCTCTTCTCCGACGACCCCGACCTGCTGAGCCTGGACACCTACGTGTTCAACACAGAGGCTCACCCCCTGCCCATCTGGGCCCCCTCCTAGGGCGGGATGGCTCACAAGTAGGCGCTGCCCAGGAGGCTGATATGTGCTGTCCGTGAGGATGCCTGTCGGCAAGACCCGGGCCCTGAC
Seq C2 exon
AAAATCAAATCAAATGACTACATTCCTGAAGCCTGAACACTCTCCTGCTGCCCTGCAAGGGCTTCCTTGGGGTCCTGGGCATCTGGTCACCCCAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046775_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.164 C2=NA
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(9.8=100)
A:
PF0153215=Glyco_hydro_47=PD(14.1=91.2)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACAGACATAACCTGCTG
R:
GGTGACCAGATGCCCAGGA
Band lengths:
220-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development