BtaEX0021132 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046775 | MAN1B1
Description
mannosidase, alpha, class 1B, member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
Coordinates
chr11:106117112-106126073:-
Coord C1 exon
chr11:106125942-106126073
Coord A exon
chr11:106124779-106124975
Coord C2 exon
chr11:106117112-106118490
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTCCGGGCCGGGCTGGTGACAGA
3' ss Score
-22.2
5' ss Seq
TTCCTAGAA
5' ss Score
-24.04
Exon sequences
Seq C1 exon
GCGGCCGACAGACATAACCTGCTGCGGCCCGAGACCGTGGAGAGCCTGTTCTACCTGTACCGCCTCACGGGCGACCGAAAGTACCAGGACTGGGGCTGGGAGATCCTGCACAGCTTCAACACCTACACGCGG
Seq A exon
AGAGGCCGGTGGGCCACAGGGCCAGGATGTTTCGGGGCCTCATAGCTGCTCGGGGTGGCCACTGGGCGTCCGGTGCTCTGCCGTTGATTCTGTGCTCCTCGCCTGGTTCCTGTTGGATCACCGTTTGGAACATGTAGGAATAAATGGGCGGTGTGATTCTGGGGATCCTGTCCACTCGGCGAGTTTCTTCCTTCTTC
Seq C2 exon
CTGTGTGCTCAGGGCCACAAGTCGTGGCCGGAGTCTCAGAGGAATCAGATGCTTCTCTCTGGGACTTCCTGCTGCTACCCAGGCGTGGAGGAGCCGCCTGGAGCGTCTGCAGGGGGAATGCAGTGGGCCTGCGGTGGGTTGGGGTCCGGCCTCTTATTTGACAAGAGGAGAGGCTGCCGTCCATGGGAAGGGACTCCTCCTTGAAGAGGGGGGCCTCTCAACACAGGACAGGCGCCCCTAGATGCAGGGCCGGGAGCACAGGAACAGGCCCAAGGGGACACGGGAACAGGGCCACTTTGGCACACAGAGACAGGAGGATGGGGACACGGGGAAGCAGGGACGGGGACACAGGGGCAGGGGCACGCAGGGGCTGGGGCACAGGGGCGTGGGCACACAGGGACGGGAACACAGGGGCGTGGGCACACAGGGGTAGGAGCACAGGGGCATGGGGACGCAGGGACGGGAACACAGGGGCGTGGGCACGCAGGGGTAGGAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046775_MULTIEX1-2/3=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(9.8=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCACAGCTTCAACACC
R:
CCCCCTCTTCAAGGAGGAGTC
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development