BtaEX0021218 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001609 | MAP2K6
Description
Bos taurus mitogen-activated protein kinase kinase 6 (MAP2K6), mRNA. [Source:RefSeq mRNA;Acc:NM_001034045]
Coordinates
chr19:61743634-61814973:-
Coord C1 exon
chr19:61814693-61814973
Coord A exon
chr19:61747299-61747365
Coord C2 exon
chr19:61743634-61743700
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCGGCTCCTGCTTTTTGCAGCCT
3' ss Score
7.72
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTGCCAGCCCTGGCCCATCATGTAGCTGCAGCACAGCCTTCCCTAACGTTGCAACTGGGGGAAAAATCACTTTCCAGTCTGCTTTGCAAGGCGTGCATTTCCATCTGGATCCCCTGGAAGTCCATCTGCTGCCTCGGTCAAGAGAAACTCCACTTGCATGAAGATTGCACGCCTGCAGCTTGCATCTTTGTTGCAAAACTAGCTACAGAAGAGAAGCCAGGCAAAGTCTTTTGTGCTCCCCTCCCCCATCAAAGGAAAGGGGAAAATGTCTCAGTCGAAAG
Seq A exon
CCTTGAAAACCGCATCAGAGTCACGTCTGCTGCTCTCTGACTGGATTGCTCTTCCAGCAATGGGCAG
Seq C2 exon
GCAAGAAGCGAAACCCTGGCCTTAAAATTCCCAAAGAAGCATTTGAACAACCTCAGACCAGTTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001609_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.000 C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000002115fB4047
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGGTCAAGAGAAACTCC
R:
TTAAGGCCAGGGTTTCGCTTC
Band lengths:
176-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development