BtaEX0021547 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47858500-47955835:-
Coord C1 exon
chr2:47955735-47955835
Coord A exon
chr2:47871972-47872145
Coord C2 exon
chr2:47858500-47858600
Length
174 bp
Sequences
Splice sites
3' ss Seq
CAAGGTCCTTTCTATTCCAGAGT
3' ss Score
7.33
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGGGACTCATAGAGGCATAGACCATCTAGAGATTTACTGCCTCCATTACGCTGCTGGGTCTCACAGCACATGTTATGTTTTTATCAGTTTCTCTCCACAAG
Seq A exon
AGTTTGGAAACCCAAGTGCCTACAGAGGCCAGGCTGGTGGGAATGAAGCAGGAAGCCACTGCAGTGAACTGGAGAGCCAAGTCCTGTCTGAAGGAGCAGCCACTGATCTGTTCCAGATAATTGTTGCAAGGCAGGAATGCTGACCTAGAGTTACCACATTGTCCAGTTTCCCAG
Seq C2 exon
GCTACCTTATTGGAATTTTGAAGACATGAAAACATCAGATGAACCAACTTGCAACATCTTGGATTCAGATTGGAAGATGAAGAGAAACTTTAAAGAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'2-4,'2-3,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACTCATAGAGGCATAGACC
R:
TCTCTTCATCTTCCAATCTGAATCCA
Band lengths:
186-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development