BtaEX0021544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47872045-48064581:-
Coord C1 exon
chr2:48064481-48064581
Coord A exon
chr2:47955735-47955856
Coord C2 exon
chr2:47872045-47872145
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTATGTTATTTCTGTTACAGAGA
3' ss Score
8.64
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TCATCAGTCCGTAGAAGTATAATCCTCCTCTAATTTTATCAAACACAAAGGAATGACTACCTTGACAGATGGCCACAGAGGATGTCAACAATTTTTTGGAG
Seq A exon
AGAGAAGAGGTACTCCTTTATAGGGACTCATAGAGGCATAGACCATCTAGAGATTTACTGCCTCCATTACGCTGCTGGGTCTCACAGCACATGTTATGTTTTTATCAGTTTCTCTCCACAAG
Seq C2 exon
AGTTTGGAAACCCAAGTGCCTACAGAGGCCAGGCTGGTGGGAATGAAGCAGGAAGCCACTGCAGTGAACTGGAGAGCCAAGTCCTGTCTGAAGGAGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGTCCGTAGAAGTATAATCCT
R:
GGCTGCTCCTTCAGACAGGA
Band lengths:
202-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development