HsaEX0038082 @ hg38
Exon Skipping
Gene
ENSG00000204406 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:148233245-148458497:+
Coord C1 exon
chr2:148233245-148233395
Coord A exon
chr2:148342214-148342336
Coord C2 exon
chr2:148458203-148458497
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCATGTTATTTCTGTTCCAGAGA
3' ss Score
8.65
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GACCAAGGAAATAAATACCAGAAATCAAGAAGAGCACACACTATTTTCCTTCATCAATCCATAGAACCCTAATGCTTCTTTAGTTCCATCAAACACAGAGGAATGACCACCATGGCAGATGGCAACAGAGGATGTCAACAATTTTTTGGAG
Seq A exon
AGAGAAGAGGTACTCCCTTATAGGGACTCGTAAAGACATAGAGCATCTGGAAATTAACTGCCTCCATTACACTGCTGAGTCACACACAACGCTTGTTATGTTTTCATCACTTCTCTCCAGAAG
Seq C2 exon
GCTACATTATTGGAATTTTGAAGTCATGAAAACATCAGATGAACCAACCTGCAACACCTTGGATTCAGATTGGAAGATAAAGAGAAAGTTTAAAGAATGTGGCCTATAAAGGCGGGTACCTGGAAATATTAACCGACTCACACTGTAAAAATGAGACCAGTTTCTAAACAATAGAGATTGTCTTAGTACAACATCAAGGTTCAAGACAAATGTTGAACTAAAAACTTTACACTCCCCACCCCCACTTCAGACAGGTACCAGCATTGGTGAATTATGATTTTCCTTAGTCAGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204406-'28-57,'28-50,41-57
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.250
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAAATCAAGAAGAGCACACA
R:
CCAGGTACCCGCCTTTATAGG
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development