BtaEX0021549 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47830050-47832973:-
Coord C1 exon
chr2:47832647-47832973
Coord A exon
chr2:47831948-47832268
Coord C2 exon
chr2:47830050-47830258
Length
321 bp
Sequences
Splice sites
3' ss Seq
TAACCCCCTCTTCCTCCCAGCTG
3' ss Score
7.63
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCGGTTCAGGACCATCCTCCTCCATAGCCATAGCTGGCATCAACCACCCTGCCATCACAAAGACAACATCTGTTCTTCAAGACGGCGTCATAGTCACCACCGCAGCTGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGATTTTCCTTTTGTTGGCCAGGAGCACGCACTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCTTCCAGCCTTCAGCAGGAGAAG
Seq A exon
CTGTCACTGGGGCCTCAGGATTAATGGCCTTGAATCCCCAGCTGTTGGGAGGTGTCCTGAACTCGGCATCGGCCAACACCGCTAATCATCCAGAGGTTTCCATAGCAACTTCTTCCCAGGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGACTGTCTCAACACTTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAATATATCTAATAATGCTGGGAATACACCTGGTCCAGCTAAACTCAACAGTAACTCTGTGGTGCCACAGCTACTTAACCCTCTACTGGGGACAGGTCTGCTTG
Seq C2 exon
GTGACATGCCCTCAATAAACAGTACTTTGAATAACCATCAACTGACTCATCTACAGTCGCTGTTAAACAACAATCAGATGTTTCCTCCAAATCAGCAGCAGCAGCAACTTCTTCAGGGGTACCAGAATCTCCAGGCATTTCAAGGACAGTCCACAATTCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=0.435 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061479fB4124
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACGGCGTCATAGTCACC
R:
GCTGCTGCTGATTTGGAGGAA
Band lengths:
352-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development