GgaEX6043212 @ galGal4
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34169521-34185398:+
Coord C1 exon
chr7:34169521-34171659
Coord A exon
chr7:34182533-34183561
Coord C2 exon
chr7:34185187-34185398
Length
1029 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTTTTGCATTGCAGGGG
3' ss Score
10.15
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGGAGTTTCCAAAGCTGGATCTGATTTAGTAAGAAAGCAAAGTCAAAGCTCTTTTCCCATCAGCTCTATGTCCCAATTACTTCAGTCCATGAGTTGTCAAAGCTCTCACATGAGCAGCAATAGTACTACCAGCTGTGGGAGCTCAAACACTGTTTTACCTTGCTCTGGTAACCAGATGCATTTTGCAGACACCAGTATGAACTCTGGCACTCTTCAGAACTCACTGGCACAGAGTTTACCATTACGAGGGGAAGGTATGCACTGCCAGAACACAAACACTAACTTTGTCCATGGTACTAGCCCTGCCACCACCAACCATCTCGCGGGTTTAATAAATCAGATGCAGGCTAGTGGGAACTGTGGGATGCTCAGTCAGTCAGGAATGGCTTTAGGAAATTCATTACATCCGAACCCACCTCAGCCAAGAATCCAGGCATCCTCCACTCCAGTGATACCAAACAGCATTGCTAGCAGCTGTAATCAAACAAGTCCTGAAGCAG
Seq A exon
GGGGTTCAGGACCATCATCATCAATAGCCATAGCTGGCACCAGCCAACCTGCCATCACAAAGACAACATCTGTTCTTCAAGATGGTGTTATAGTCACTACTGCAGCTGGAAACCCTCTTCAGAGCCAGCTGCCCATTGGGGGTGATTTCCCTTTCGCTGGCCACGAACACTCGCTTCATTTCCCGCAGAACAGCTCTTCAAACAACAATCTTCCACCTTCTTTGAATCAAAACCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAGCAACATCTCCTAAGCCAGAATCTATTAAATATACTGCAGCCTTCAGCAGGAGAAGGCAAGTCTGAGGTCAACCTCAACCCTTTAGGTTTTCTCAACCCGAATGTAAATGCTGCTTTAGCTTTTCTCTCCAGTGACGTGGATGGGCAGGTATTACAGCCTGTTCATTTTCAGCTTCTAGCAACCCTCCTCCAGAACCAAGCCCAAGCAGCTGCCATGCTTCCCCTACCATCTTTCAATCTGACCATCTCAGATTTGTTGCAACAGCAAAATAACCCTTTGCCCTCAGTAACACAGATGACAGCCCCACCTGACCATTTGCCAAGCAATCAGTCAGAAAGCAACAGGGTTGAGACCCTTTTAAGCAACCCCCTGGGGAACCCTTTACCAAGCTTTTCAGGCACTGACACTACTTCTAACCCCCTGCTCCTCCCAGCTGTCTCTGGGGCCTCAGCATTAATGGCCTTGAATCCCCAGCTGGTGGGAGGTGTCCTGAACTCTGCGTCGGGCAACACCGCTAATCATCCAGAGGTTTCCATAGCCACCTCCTCCCAAGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGTCTGTCTCTACCCTGGGTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAACATATCTAATAATGCTGGGAATACATCTGGTCCAGCTAAACTCAACAGTAACTCTGTGGTGCCACAGCTACTTAACCCTCTACTGGGGACAGGTCTGCTTG
Seq C2 exon
GTGACATGTCATCTATAAACACTACTTTGAATAACCATCAACTGAGTCATCTCCAGTCACTATTAAACAACAATCAGATGTTTCCTTCAAATCAGCAGCAACAGCACCTTCTCCAGGGGTATCAGAACATGCAGGGCTTTCAAGGCCAGCCCCCAATTCCTGGCCCAGCTAACAACCCAAACCCCATGGCATGTCTGTTCCAAAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449-'10-12,'10-10,16-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.424 C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATGCACTGCCAGAACACA
R:
GGTGCTGTTGCTGCTGATTTG
Band lengths:
355-1384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]