BtaEX6009920 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47830050-47847256:-
Coord C1 exon
chr2:47845124-47847256
Coord A exon
chr2:47832647-47832973
Coord C2 exon
chr2:47830050-47830258
Length
327 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCCTTTCTTTCAGGCG
3' ss Score
11.73
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
TGCAGTTCCTAAACCTGGACCCGACTTGCTAAGGAAGCAGGGTCAGGGGTCGTTTCCCATCAGTTCAATGTCTCAGTTACTACAGTCTATGAGTTGTCAAAGCTCTCACTTGAGTAGCAATAGTACCCCGGGTTGTGGGGGCTCAAATACTGCTTTGCCTTGCTCTGCTAACCAGCTGCATTTTACAGATCCCAGTATGAACTCCAGTGTTCTTCAGAATTCACTGACACAGAGCATACCTTTAAGAGGGGAAGCCATGCACTGCCACAATGCAAACACTAACTTTGTTCACAGTAATAGTCCAGTCCCAAACCACCATCTTACAGGTTTAATAAATCAGATTCAGGCTAGCGGGAACTGTGGGATGCTCAGTCAGTCGGGCATGGCTTTAGGAAATTCATTACATCCCAATCCACCTCAGTCAAGAATTTCAACGTCCTCCACTCCAGTGATACCAAACAGCATTGTTAGCAGCTATAATCAAACAAGTTCTGAAGCAG
Seq A exon
GCGGTTCAGGACCATCCTCCTCCATAGCCATAGCTGGCATCAACCACCCTGCCATCACAAAGACAACATCTGTTCTTCAAGACGGCGTCATAGTCACCACCGCAGCTGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGATTTTCCTTTTGTTGGCCAGGAGCACGCACTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCTTCCAGCCTTCAGCAGGAGAAG
Seq C2 exon
GTGACATGCCCTCAATAAACAGTACTTTGAATAACCATCAACTGACTCATCTACAGTCGCTGTTAAACAACAATCAGATGTTTCCTCCAAATCAGCAGCAGCAGCAACTTCTTCAGGGGTACCAGAATCTCCAGGCATTTCAAGGACAGTCCACAATTCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'8-13,'8-11,10-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.336 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000061479fB4125
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGGATGCTCAGTCAGT
R:
GAAACAGACAAGCCATGGGGT
Band lengths:
342-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]