DreEX6024710 @ danRer10
Exon Skipping
Gene
ENSDARG00000086980 | mbd6
Description
methyl-CpG binding domain protein 6 [Source:ZFIN;Acc:ZDB-GENE-041027-3]
Coordinates
chr6:58891922-58899102:-
Coord C1 exon
chr6:58897363-58899102
Coord A exon
chr6:58894811-58895601
Coord C2 exon
chr6:58891922-58892075
Length
791 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTGTTTTTTGCAGGTC
3' ss Score
11.02
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
TCCTTCCGCATCTCCATCCCAACCCCTCTCCGCCCTGCTTCACCTTCTTAGCATGCAGAACGCAAATCAGCAGTGCATTGGTGCCAAGCCGGGTAACATGCACGCAAACACATCCCCCAGACCCATCACTCCACTGACGCCCCAAGGTGACGGGCAGTCTGTGTTACGCATACACAACCCACAACCCCAAAGCACAACCCCTACTCTAGACCCCCAGCAGCCGGCATCCCAAGCGTTTCCGATAATGGGTGACGAGACAACAGCAAACCTCAAAGCCGCCTCCAGCAACACCATCCTGAACCTGAGCCAGCCCCACGTGGGCACCACCACGCCAGACCTCAGCGGTTCAATTATATCCATGATCAACCAGATGTCCTCAAACTCCTGCTTGCCCACGTTTGCGGAGAAAGTTTGTGGGTCCAAAATGACCGAGGCTTATCCTGAGCACAGCACCTATCAGATTAACCAGCCAAACCACAGTCCAGATGTGGAAGATAAAG
Seq A exon
GTCCTGTAGAGACGATAGACTCAGACACACGATTGCTGGCTGGCTGTGAGCCCGACCACGGCCTCTCGTTATCCACTGCCCCAACTTCTGACCTTACCAACCCAGCCACAGACCCTGCTATCTCCCTCCCGCTGGCCGAGGCTTTTCCCTTCATGACCCAAGAACAGCTCCTCCAGCTTCTGTCCTCCAATGCTGGCCTGCCTTCCCTTCTGCCGCCCTTCCTAGGCTCCCTACCTCTCGGCCTCTGGACGGGCAGTCAACCCTCGACGCCAGGCAGCAATCAATCTCAGCATCCACCCATTGGGAACCAGGGATCTCCTCTTAACCTTCTCAACCAAGCCGAGCTCCCTCTTAATCTCCTGAGCCTGTTAAATCCTGCAGGATCGGCTGCAGCGCTGCCCCCGGTGGCAGGGGTGGAAACTGGAGAAAAGCCCCCAGGGCTTCAAGCTCTCCTAATGGCTTCTTTGCTTCTCGGACAGAATCCGGCAGCCATGTTGCCATTACCGGCGCTCAATCTGGAGCTTCCTACGCCGCCGCAGCAGGTGTTTGCGGACGGGGTGTCTTTGGAAAAGCCACCTGCTCTGCTGGACTCTGTGCTGATGGGGCCGGGGCTTCTGGAGGCTCTTCAGACTCTTGCCCCGGGTGCAGACGGCCAGTCGCTGCTGCTTTCTGCCCCTCTCGCTGCTCCTCCACCCGCATTCCTGTCCCTCAATCCCGCTCTGCTGGCCGCAGCTCTCGCACAGACCGAACCCCTACCCAACCACACGCCATCCCCCCCGCCGCATTCTCAG
Seq C2 exon
GGGACTCTGTCCAGCCCTGCTCTAGTTTCTACCTCGGTGTCCTGCGGCCCTCTGGTGTCGGCGGGGCCAGAAGTTTGTGACCCGCTGGCGGAGCAGGACAAGAACAGCCAGACGCATCACTTCCTATCGCCGCTGCTCGCCCCGGGGGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086980-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.439 C2=0.519
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGCACAACCCCTACTC
R:
AAACTAGAGCAGGGCTGGACA
Band lengths:
343-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]