RnoEX0052982 @ rn6
Exon Skipping
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33450203-33467909:+
Coord C1 exon
chr3:33450203-33452338
Coord A exon
chr3:33465220-33465546
Coord C2 exon
chr3:33467689-33467909
Length
327 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTTCTCATTGTAGGTG
3' ss Score
12.03
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
TGCAGCTCCTAAACCTGCACCTGACTTGCTAAGGAAGCATGGGCAGGGGTCATTTCCCATCAGTTCAATGTCTCAGTTACTACAGTCTATGAGTTGTCAAAGCTCTCACTTGAGTAGCAATAGTACCCCGGGTTGTGGGGGATCAAATACTGCTTTGCCTTGCTCTGCTAACCAGCTGCATTTTCCAGATCCTAATATGAATTCCACTGTTCTTCAGAATTCACTGACACAGAGCATACCTTTAAGAGGGGAAGCCGTGCACTGCCACAATGCAAACACTAACTTTGTTCACAGTAACAGTCCAGTTCCCAACCACCATCTTGCAGGTTTAATAAATCAGATTCAGGCTAGCGGGAACTGTGGGATGCTCAGTCAGTCGGGCATGGCTTTAGGAAACTCATTACATCCCAATCCACCTCAGTCAAGAATTTCAACGTCCTCCACTCCAGTGATACCAAACAGCATTGTTAGCAGCTATAATCAAACAAGTTCTGAAGCAG
Seq A exon
GTGGTTCAAGCCTGCCGTCCTCCATAGCTATAGCTGGCAGCAGCCACCCTGCCATCACAAAGACAACATCTGTTCTCCAAGATGGTGTCATAGTCACCACCGCAGCCGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGACTTTCCTTTTGTTGGCCAAGAGCATGCCCTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCCTCCAGCCTTCAGCAGGAGAAG
Seq C2 exon
GCGATATGTCATCCATAAACAGTTCTCTGAATAACCATCAACTGACTCACCTACAGTCACTGCTAAACAGCAGTCAGATGTTTCCTCCGAGTCAGCAGCAGCCGCCGCCGCAGCCGCACCTTCTCCAGGGACAGCAGAATCTCCAGGCCTTCCAAGGACAACCCACAGTCCTTTGCCCAGCTAACAATAACCCCATGGCATGTCTGTTTCAGAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596-'9-13,'9-11,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=0.344 C2=0.598
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTTCCCAACCACCATCT
R:
TCCTTGGAAGGCCTGGAGATT
Band lengths:
358-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]