BtaEX0021565 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116241607-116244760:-
Coord C1 exon
chr1:116244666-116244760
Coord A exon
chr1:116242717-116242780
Coord C2 exon
chr1:116241607-116241681
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCCTTGGTATGTTTCGACAGCCC
3' ss Score
6.16
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq A exon
CCCCATCCTTGATGCTTCTACACTGTTGGGTGCAGCATCCTGTCCTGCAGCAGCAGGAAAAATG
Seq C2 exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAGAATTTTCATCACTAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564_MULTIEX1-13/13=12-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.819 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000005998fB4130
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGTGCACGGTGCTAC
R:
ACTTGTGGCTAGTCAGATGTTCG
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development