RnoEX0053004 @ rn6
Exon Skipping
Gene
ENSRNOG00000014076 | Mbnl1
Description
muscleblind-like splicing regulator 1 [Source:RGD Symbol;Acc:628668]
Coordinates
chr2:150864802-150867793:+
Coord C1 exon
chr2:150864802-150864896
Coord A exon
chr2:150866607-150866670
Coord C2 exon
chr2:150867719-150867793
Length
64 bp
Sequences
Splice sites
3' ss Seq
GTCCTGGTATGTTCCGACAGCCC
3' ss Score
6.46
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq A exon
CCCCATCCTTGATGCTTCTACACTGTTGGGTACAACATCCCGTCCTGCCGCAGCAGGAACAATG
Seq C2 exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAGAGCTGTCGTCACAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014076-'32-28,'32-27,33-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000088461fB8461
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCCGCAGCAACAACAT
R:
GACGACAGCTCTACATCTGGG
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]