BtaEX0021703 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011032 | MCPH1
Description
Bos taurus microcephalin 1 (MCPH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103315]
Coordinates
chr27:4339692-4343004:+
Coord C1 exon
chr27:4339692-4339835
Coord A exon
chr27:4341233-4341321
Coord C2 exon
chr27:4342915-4343004
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTCTGGCCTTCAGGAT
3' ss Score
10.03
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTACCAATGTTCCTGTTCTCTCATTTGAATCTAATGGCTCGTTGGTGTACAGTCCGACAGGTAAAGTCTGTAGGGGCCACCACAGTGCAATGAAGAAGAGGCTGCAGGAGATGAAGGAGAAACGGGAAAACCTTTCCCCCACCT
Seq A exon
GATTCCTGTGATGTGTAGAACTCCTCCTGCACAAGGTTTTAAAGTTGTTGTAGCTGTTACATTTTCTTCTATTACTCTTACAGTTTAAG
Seq C2 exon
CCTCCCAGATGATTGAACAGTCTGATGATAACACTGTGAACCTTCTGCATGAAGCATCTTTGAACCTTTCACATGATACTTTGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011032_MULTIEX2-1/8=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=NA C2=0.613
Domain overlap (PFAM):
C1:
PF034059=FA_desaturase_2=PD(9.7=14.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGTACAGTCCGACAGGT
R:
AGGTTCAAAGATGCTTCATGC
Band lengths:
170-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development