BtaEX0021704 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011032 | MCPH1
Description
Bos taurus microcephalin 1 (MCPH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103315]
Coordinates
chr27:4339692-4357261:+
Coord C1 exon
chr27:4339692-4339835
Coord A exon
chr27:4342915-4343004
Coord C2 exon
chr27:4357152-4357261
Length
90 bp
Sequences
Splice sites
3' ss Seq
AGTTGTGATTGTGTTTTCAGCCT
3' ss Score
5.38
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTACCAATGTTCCTGTTCTCTCATTTGAATCTAATGGCTCGTTGGTGTACAGTCCGACAGGTAAAGTCTGTAGGGGCCACCACAGTGCAATGAAGAAGAGGCTGCAGGAGATGAAGGAGAAACGGGAAAACCTTTCCCCCACCT
Seq A exon
CCTCCCAGATGATTGAACAGTCTGATGATAACACTGTGAACCTTCTGCATGAAGCATCTTTGAACCTTTCACATGATACTTTGTGTTCAG
Seq C2 exon
GTGTGAAAAGTGGACCAACAAGGCACAGTGTTGTGGCCAGCTCACGGAAAGGCTGCCAGGACCTCCTCAGACTGCGGGAGGAATCCGGGAAGAAGGGCAGAGGCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011032_MULTIEX2-2/8=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=0.613 C2=0.811
Domain overlap (PFAM):
C1:
PF034059=FA_desaturase_2=PD(9.7=14.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCACAGTGCAATGAAGA
R:
TCTGCCCTTCTTCCCGGATTC
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development