GgaEX1035512 @ galGal3
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
NA
Coordinates
chr3:91475993-91480867:-
Coord C1 exon
chr3:91480727-91480867
Coord A exon
chr3:91479046-91479138
Coord C2 exon
chr3:91475993-91476546
Length
93 bp
Sequences
Splice sites
3' ss Seq
TATCATTTGCAAATTCCTAGCTT
3' ss Score
3.22
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AAACTGATATACCAGTTTTACTGTTTGAAGATGATGGTTCACTTGTGTATAGCCCTGTTTCTAAAATAAGAGATCAATGCAGTGAAATGGAAAGAAGAATAAATGAGATGAAGGAGAAAAGAGAAAATCTTTCTCCTACTG
Seq A exon
CTTCCCAAATGTTTCAAGCATCTCCACGTTGCTCACAAGGAGACTGCCCTCTCTCTACCTCTTTAACTAATTCAGAAGACGCAGTATTGCAAG
Seq C2 exon
GGGAAAAAAAGAAAGACTGCTTAAACTCAAGTTTTGATGACTTTTTTGGAACTGTTACATCAAAGAGACAGAAAAAAGAGGTAGAAAATACCTGCAATACTCAGACTTGTACTCACGTTTCTATGAGTGCTTCAAAGAATTCTCTCTCATGTGGCTGTGACCAGAAGAGCTTAACCCGGAAACAAGCTAGCAGAAGAAGCATAGGTAAAAAGTGGATTTTGCAAAATACTTTGCGTGATAAATTGTATTTAGAAATAAAAGATCTAGAAAAGTTTTCAGAGCAAAACCATAAGGATGAAAGTACAATGACTACTTCAGTTGCAAACAAAAATTATTTTCTACAAATCAAGGACTTGGTTCATACTACTCCTTCCCAAAAAACTGCTGAGTTAATGACTGTTAATAGTGCTTTGAATGACAGTGTCTCTAATTCACTTGTGAGCAGTGAAGAATTAAATACACATTCGTTTGATAGAAGGTTCCCTTTTGGCAGAAGTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'8-10,'8-9,9-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.188 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCACTTGTGTATAGCCCTGT
R:
TCTGTCTCTTTGATGTAACAGTTCCA
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]