GgaEX1035512 @ galGal4
Exon Skipping
Gene
ENSGALG00000016332 | MCPH1
Description
microcephalin [Source:RefSeq peptide;Acc:NP_001098789]
Coordinates
chr3:88074232-88078756:-
Coord C1 exon
chr3:88078616-88078756
Coord A exon
chr3:88076935-88077027
Coord C2 exon
chr3:88074232-88074435
Length
93 bp
Sequences
Splice sites
3' ss Seq
TATCATTTGCAAATTCCTAGCTT
3' ss Score
3.22
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AAACTGATATACCAGTTTTACTGTTTGAAGATGATGGTTCACTTGTGTATAGCCCTGTTTCTAAAATAAGAGATCAATGCAGTGAAATGGAAAGAAGAATAAATGAGATGAAGGAGAAAAGAGAAAATCTTTCTCCTACTG
Seq A exon
CTTCCCAAATGTTTCAAGCATCTCCACGTTGCTCACAAGGAGACTGCCCTCTCTCTACCTCTTTAACTAATTCAGAAGACGCAGTATTGCAAG
Seq C2 exon
GGGAAAAAAAGAAAGACTGCTTAAACTCAAGTTTTGATGACTTTTTTGGAACTGTTACATCAAAGAGACAGAAAAAAGAGGTAGAAAATACCTGCAATACTCAGACTTGTACTCACGTTTCTATGAGTGCTTCAAAGAATTCTCTCTCATGTGGCTGTGACCAGAAGAGCTTAACCCGGAAACAAGCTAGCAGAAGAAGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016332-'9-10,'9-9,10-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=0.281 C2=0.123
Domain overlap (PFAM):
C1:
PF070836=DUF1351=FE(54.7=100)
A:
PF070836=DUF1351=PD(1.2=3.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCACTTGTGTATAGCCCTGT
R:
TCTGTCTCTTTGATGTAACAGTTCCA
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]