RnoEX6056039 @ rn6
Exon Skipping
Gene
ENSRNOG00000028586 | Mcph1
Description
microcephalin 1 [Source:RGD Symbol;Acc:1560642]
Coordinates
chr16:76078399-76084008:-
Coord C1 exon
chr16:76083886-76084008
Coord A exon
chr16:76081499-76081588
Coord C2 exon
chr16:76078399-76079508
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCATTCATTATGTTATCAGCCT
3' ss Score
2.53
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGACGACGTCCCTGTCCTCATGTTTGAGTCCCCTCAGTCACTGGTATACAGCTCCCCAGTAAACATGATGAAGAAGAGACTACAGGAGATGAAGGAGAAGAGGGAAAACCTTTCCCCTACCT
Seq A exon
CCTCCCAGATGTTGGAGCAGTCTCAGCAGAATCCGTGTGTCAGTCTGCTTAAAACATCCTTGAACATGTCTCACCAACCTTCGAGTTCAG
Seq C2 exon
ATGAATCCTTTGCCAGTGGTTCTCACTTATCTTTTGATGGTCCCTGTGGAGATCAAGAAAGGAAACTGGGAAGATCTTCTAATGAGATGGCCAGGATGACATGTCCTTCCTCACCTGTGTTGAGGGCAAGCAGTTTTTATGGTTCAGCATCATCCAACCACCTCAGGCAGCCAAGTCCTCAGAAAGCTGCAGACACTCCTTCAAAGGAGGGTGTCAACCAGCAGAAAGAGGCTACAAGTGAGGTAACTGATTCCAAGAGAAAGCAAGCTGCAGGTGTTTCTCAGGGGATGGCTGATGAGAAGCACTGTCTGTCTCCTACCAAGTCTGTCATAGAAGAGCGTGTAGTACATTTGGAACCAAAGAGTTCTCCAGCAAAGAGAAAAAGGACAGCGGACTTGGGTTCACCTTCAAAAGGAAAACTGAAGAAGAGGTACAAGAGAAAGTCTACTCCGGCAGTACAATTATTCAAGTCCGACTGTAGCCCGCAGTCCACAACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028586-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=1.000 C2=0.881
Domain overlap (PFAM):
C1:
PF034059=FA_desaturase_2=PD(36.5=83.3)
A:
NO
C2:
PF122583=Microcephalin=WD(100=99.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCCCTGTCCTCATGTTTG
R:
TGATCTCCACAGGGACCATCA
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]