MmuEX0028279 @ mm10
Exon Skipping
Gene
ENSMUSG00000039842 | Mcph1
Description
microcephaly, primary autosomal recessive 1 [Source:MGI Symbol;Acc:MGI:2443308]
Coordinates
chr8:18627118-18641665:+
Coord C1 exon
chr8:18627118-18627240
Coord A exon
chr8:18629546-18629635
Coord C2 exon
chr8:18641565-18641665
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACTTGTCATTGTGTTATCAGCCT
3' ss Score
4.98
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGATGACGTTCCTGTCCTCCTGTTTGAGTCCCCTCGCTCACTGGTGTACAGCTCCCCAGTGAATGTGATGAAGAGGAGACTGCAGGATATGAAGGAGAAGAGGGAGAACCTTTCCCCTACCT
Seq A exon
CCTCCCAGATGTTGGAGCAGTCTCAGCAGAATCCATGTGTCAGTCTGTTTGAAACATCCTTGAACATTTCTCACCAACCTTTGAGTTCAG
Seq C2 exon
GTGTTAAAAATGGACCAGGGCGGCCAGATCCTTCAGACAGCTCTTGCACAGGCCTTGTCAGACCTCAGCAGAAACCAAAGAAAAGTGAGAAAGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039842_MULTIEX1-5/12=4-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=0.476 C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTTCCTGTCCTCCTGTT
R:
TGTGCAAGAGCTGTCTGAAGG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types