MmuINT0096775 @ mm10
Intron Retention
Gene
ENSMUSG00000039842 | Mcph1
Description
microcephaly, primary autosomal recessive 1 [Source:MGI Symbol;Acc:MGI:2443308]
Coordinates
chr8:18627118-18629635:+
Coord C1 exon
chr8:18627118-18627240
Coord A exon
chr8:18627241-18629545
Coord C2 exon
chr8:18629546-18629635
Length
2305 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ACTTGTCATTGTGTTATCAGCCT
3' ss Score
4.98
Exon sequences
Seq C1 exon
ATGATGACGTTCCTGTCCTCCTGTTTGAGTCCCCTCGCTCACTGGTGTACAGCTCCCCAGTGAATGTGATGAAGAGGAGACTGCAGGATATGAAGGAGAAGAGGGAGAACCTTTCCCCTACCT
Seq A exon
GTAAGTGGCTGCAGTGTAGAATGAAAAGGATGTCTGCTGGCGAACTACAGAAGAAAGGTTACTTGATCTCTACCCTAGGTGCTTGCTGTTTTTCCTTTCTGCAGTGCATGGGTCAAGGGATCACGCTGCACCCCCAGTCTCCTTACCTAGACATTTTGAGTGCTTCCTGAATTTAGTACTTAATTTCAGTGGAGACCTTTCTAGTGTTTTTTTCCAGAAGAAATGTGCTTTGTAAGGTTGAGTGTTCTTCAGTTCCCTTCTTGCAGCTCCTTCATCGTTTTCAGTATCTCTTTTCTTTTTCAAAAAAAGTAAGGAGCCGGAAAAATGGCTCAGAAGTTAGAGTGCTTGGTACCTTTGCAGAGGATTGGAGCCCAGTTCCCAGCACCACATTGGGTAACTCATAACTGTCTATGACTCCAGCTCCAAGGGAGCCAGTGCCTTCTTCTGGCCTGTGTGGGAACCTGCATACATGTGTAATTTAGACATGCATATACACATAAATAATAAAAAACATTTTTTACAGAATAAAATAATAAAAAACTAAGTTAGTCAGGTCTCTTTAAAAGGAGAATATTTTAATTACCTATGTAGTAGTAAGCACATTTTAATAAGATGATGAGCAATGCTGTGAATAAGCAAAGCCTTGCCTCCCCACTGCTTACACTCCTCTGCTGATGTATGTACAGTTGGAATGATACAGGTGTGCCTTCTGTGTGCGGCCGTAGTTTATTTCTTACTTAATTTAGATCATTAGAATATTCTTTTTTGTTTGTGGTTGTTGTTGAGACAGGATTTCTCTGTATAGCCCTAGCTGCCCTACAACTTGCTTTGTAGACAATGTGGTCTTGAACTCAGAGATCCAGCTGCCTCTGCCTCCCAAGTGCTGCGGTTAACTGTATGCACTACCATGCCAGCCACATCATACGCATTTTATTAAGCCTTTTCCTTCACTTGCTACCATTACAAACTACACTAGACTCATCTGCATCTCAGGTCCATGAGTATCAGCCATGGTAACAAGTAAGACTGAGATGAACTGTAGCTTTTACAGAGACACCATCATGGTTTTGTTGGCAGCTGAAGCAGGTATATAGCTCTGTCTCATGTGCATGTCCAAATTGATTCAACGCGTATATGAACTGAGTCAGAGATTTTTAAACCCCACAGCTGAAAGGCCACTGTGGTGAGTGCATGTCTGTAATTCAAATCCTAGTATTCAAAGCTGGAGGCAGGAGGAGCAGGAGCTCAAGAACAGCTTGTAAAGTCAGCCTGAATTAACTTGTTAAAATGAGCTTGTCCCTAAAAATAAAAATAAAAAATTTAAAGCCCCCAACACCCCCCCCCTCCACTTTGCTTCCAAAGTAACTGTACAAAGGCTAAGGCTATGTATTTCAGTTCTTGCCTAGTGTGCACAAAGCCCTGGGTTCAGTTCCCAGCATCAGAACAACTGAACAACCACAGTATCTGAGGACTTCTGACTGCCCATACCTTCTTTGTATATATGCCCTTGCTTTATAGTCACTTTATTAAGTTTTCTGAGGGAAACATCCTCTGATTTTCCTTTTGAAAAAACGACTTTTAGAGGATGCTTAAGTACTGTACTTCCAGAGGACACAAGAACAGTTCCCAGAAGAATGTTGGGTGGCTCAAAACATCTTGTGACTACAACTAGAAGGGATCCCAGTACCTCTTCTATACTCATGTCCCATACCCATACACAGAAACACATAAATACACATAATTTAAAATAAATTTTAAAAATCTTTGGATATGTTTGTTTTGTCTCTTGTATGGACAGCTTTTGAAGATAGCGCCTAGAGCCTCATTTATTGAATCATTGATGTTCTAGATATTTTCTTTAAAACTGGTTTCTTAACTGAAACACTGTTGACTTTTGGGGACAATTTGTTATTGTGTAGTCTTTCTAAACCAGTTGCCCCTGTCTGTGTCAGCACTGGACTTTTACTTACTTAGAAGTAAATATTAGAAACTTCAGTTCTCAAACCGAAAACATTCACTTAATTTGGTTTAAGCTTCATACAAGTTGGATTTTGAAAGTCCCATCTCATGTGATTGTGTGATCATGTTTGTGGGGCAGTGATTGATAGGGATTCATTTTGTCAGTCTTAAATCTACAGTATAACTGATATAGTTTTTGTTCTCGAATTATATTAAGCTTAGCCTAAAGGTAAGATTAATTTCCTGTGTATATGGGATCAGGAGCAGAATGGGTAGATATGCTCTTGTCCCTGTCCAGTAGGCAATTCTGCCATCCAGTTATTGAAACTTGTCATTGTGTTATCAG
Seq C2 exon
CCTCCCAGATGTTGGAGCAGTCTCAGCAGAATCCATGTGTCAGTCTGTTTGAAACATCCTTGAACATTTCTCACCAACCTTTGAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039842:ENSMUST00000039412:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=NA C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types