DreEX0045572 @ danRer10
Exon Skipping
Gene
ENSDARG00000058372 | mcph1
Description
microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
Coordinates
chr13:6190687-6192230:-
Coord C1 exon
chr13:6192099-6192230
Coord A exon
chr13:6191640-6191720
Coord C2 exon
chr13:6190687-6191397
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTAATTGTCTTGTACCACAGCCT
3' ss Score
5.42
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
TTTCGGACACCTCACCTTTTATCATTGATGAGGAACGTGGAATAGTGTACAGCCCCTCTTTAAAACGCTCTGACAGCATGGCTCAACGATTGAAAGAAATGAAAGCTGGACGTGAACATCTCTCACCCACTG
Seq A exon
CCTCACAGAAGCAGGACATTGGCTCAGAGCATGATCCATCCCCTCCAGCATCGACAGCTCTGTCTTTCTTGCAGCAGCTAG
Seq C2 exon
ATGCATGTAATCGTGTCAGTGATGAGAGGGGCATTGAAAATCCACTATCTTCAAAATCAGAACTGGGTTTATTGAGCAAAACCAGAGGATCGAAGCAGACCACTCTTAAGAACTTCCTTTATGAAACATCTTCTGAAAGAGAAGAAAGCTCGAATCTCAAACCTGAAACTAAAAACACTGGAATGTCCACAGAGTTATACGCCAGCTCTGAAAAGCCTAGAAGCTTCCTGCCCAAAAGCCTTACAAAAGCAATTCGCAGAAAAAGTGTACATAACTGCAAAGAACTGCTGACCAACTCCGAATGTTTGTATTCCAGCAAGTCGTCTTCAGAAAATGAGCATATCTTTCAAAAAGACGAATCTATGATTGATAAGCCAATGCAGAAACGTCAACGTCGAACATCTGCTGGACTGCATTCAGCCTCGCTTTGTGCTCTACCTAGTAGAGAGATTTCGGACGATGAGTTGTTTGAAGACTTCTTCTCGCCAGCAAACAATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058372_MULTIEX3-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.929 C2=0.580
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAGCATGGCTCAACGAT
R:
AGTGGTCTGCTTCGATCCTCT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]