BtaEX0021705 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011032 | MCPH1
Description
Bos taurus microcephalin 1 (MCPH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103315]
Coordinates
chr27:4342915-4357261:+
Coord C1 exon
chr27:4342915-4343004
Coord A exon
chr27:4344769-4345917
Coord C2 exon
chr27:4357152-4357261
Length
1149 bp
Sequences
Splice sites
3' ss Seq
TCTTCATTAATATTTTCCAGACA
3' ss Score
7.25
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
CCTCCCAGATGATTGAACAGTCTGATGATAACACTGTGAACCTTCTGCATGAAGCATCTTTGAACCTTTCACATGATACTTTGTGTTCAG
Seq A exon
ACAACTCTTTGGCTGGTGGTCTTCCCGTGTCTGCTGACGATCTCTGTGGAGGCTCCGCAAGTGGGACTCAGGAGGGGAAACTGTTCGAGTTCATTACTGAAAGGGGAAGTGATGTGTGTGCTGCTTCGCCGGTGTTGCAGACAGGCAGCGTCGGCCCCTCAGCAGCTCCCTGTCCCCTGGATCTCTTGACTCCTCACAGATCCACCAGCAGTCCTCCCAAGGCAGAGACCCCCCAGCAGAGCAGGGCTGCGCGTGGGGTTGTCACCCCTATCTCAAAGCCATCGAAGCCGGTGGCCCAGGGGTCGTCTGATGGGAAGAAGCGTTTGTCTCCTGTGTCCTCTGCTACAAAAGGCCGTCCCGGAGGCCGTGAACAACACATGGGCTCCTCAGCCAAGAGAAAAAAGACACCGGAGAACTCTTGTCCAGGCTTGGAGGAGAGACGGAAGAGGAGGCGGTCCCTCGGGCAGCGCCCTGCTCCCCGACTGCGGCTGTGGAAGGCAGAGCGCGGCCTGCGGTCTGTGCGGAGGCCCGCTGTCAAGAGTCTGGCCCTCGAGGAGTTCTCATACGATGATTACTTTTCTCCTGATAATCTCAAGGAGAGGGTCTCGGAGGGGCTTCTTGGGGAGCAGCTGCCCTCCAGACCCCCTGCGCTCCACTGCCAGAGGAGCCTTTCCAAGACCGAGAGGACCAGCCTCCTGGACAGGGCTGACCTCTCCCTCATTGGCAGAAGCCCCAGGCCCGCCGTCAGCACCTGCTCCACGGCGAAGCCTGCACTCTCCGGGGCAGACGCGGGGCTGGGCGGCGGGACCTCGGGGGGCACGTCTGCTGCTGACAGGACCCCGGGGCCCTGTCCCCGTGCCGAGGCCCAGGGTGGGGGCGATGTCCGCCCCGCTGGGGGTGACGCTCCACAAACCCGCAGCCAACTCATCCCCCAGACGGGACCACAGGGAGACCGCAGCCCTCTGAAAGGAAGCAGGGAGGAGACGGAAGAATGGACTGACCCCCAGAGCACGCAGAAAGAAGGCGCTCCTCCTGAAACGACGGAATCCGCTGCAGTGCACAGTGAGGGTAAACCAAGCGCTGCAGGCGGCTATGCTGAGGACAGACCCGCGGGGGCGAGGGGGGCGCCAGCCCACGGCAGCAGTGGAA
Seq C2 exon
GTGTGAAAAGTGGACCAACAAGGCACAGTGTTGTGGCCAGCTCACGGAAAGGCTGCCAGGACCTCCTCAGACTGCGGGAGGAATCCGGGAAGAAGGGCAGAGGCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011032_MULTIEX2-3/8=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.878 C2=0.811
Domain overlap (PFAM):
C1:
NO
A:
PF122583=Microcephalin=WD(100=99.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCAGATGATTGAACAGTCTG
R:
TCTGCCCTTCTTCCCGGATTC
Band lengths:
191-1340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development