RnoEX0053278 @ rn6
Exon Skipping
Gene
ENSRNOG00000028586 | Mcph1
Description
microcephalin 1 [Source:RGD Symbol;Acc:1560642]
Coordinates
chr16:76070367-76081588:-
Coord C1 exon
chr16:76081499-76081588
Coord A exon
chr16:76078399-76079508
Coord C2 exon
chr16:76070367-76070467
Length
1110 bp
Sequences
Splice sites
3' ss Seq
CTCTTTATTGATCTCTCCAGATG
3' ss Score
9.66
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
CCTCCCAGATGTTGGAGCAGTCTCAGCAGAATCCGTGTGTCAGTCTGCTTAAAACATCCTTGAACATGTCTCACCAACCTTCGAGTTCAG
Seq A exon
ATGAATCCTTTGCCAGTGGTTCTCACTTATCTTTTGATGGTCCCTGTGGAGATCAAGAAAGGAAACTGGGAAGATCTTCTAATGAGATGGCCAGGATGACATGTCCTTCCTCACCTGTGTTGAGGGCAAGCAGTTTTTATGGTTCAGCATCATCCAACCACCTCAGGCAGCCAAGTCCTCAGAAAGCTGCAGACACTCCTTCAAAGGAGGGTGTCAACCAGCAGAAAGAGGCTACAAGTGAGGTAACTGATTCCAAGAGAAAGCAAGCTGCAGGTGTTTCTCAGGGGATGGCTGATGAGAAGCACTGTCTGTCTCCTACCAAGTCTGTCATAGAAGAGCGTGTAGTACATTTGGAACCAAAGAGTTCTCCAGCAAAGAGAAAAAGGACAGCGGACTTGGGTTCACCTTCAAAAGGAAAACTGAAGAAGAGGTACAAGAGAAAGTCTACTCCGGCAGTACAATTATTCAAGTCCGACTGTAGCCCGCAGTCCACAACCAGACCTATCCCGGGGACTCCTGATGTTGAGGCCTCTTCGTATGAGGACTATTTTTCCCCTGACAATCTCAAGGAGAGGAATTCAGGGAGACTTCCCGAGGCTCAGCTACTAGCAAGCCCTTCTCTGTTCCGCTGCAAAGGTCTCTCAAAGTGGGAGCGAAAAAACATGCTAGAAATGTGTGATTTTACCTGCATTGGTGAAAAACACAGATCCACCAACATTAGTGACTTAATTTCAAAAAGTACGTGTAGTCTTGAGAAACCTGATAAGGAGGACGTAAATACAGCTTCTACTTGCTTGCCTTTGTTGGGGACCTCTGCTGATGACAGCCCAGGGCAGCGCAGGCACCCTGGCCCTCAGCCGAGGGAAGACACAGGTCCAGAAGGAAGCAGCCACCCTGATATCCTGTACAGCCCTGCTCACCACATCACACCCTTGAAAGGAAGTAGTACAGAAACAAGAGACCCAGGTGATGGAAAAGGCTCCCCCAAAGAAGGCACCACTCCTCCCGCATCAGCCTCTCCTGAAGGTGAAGCACACAGCTGTAATCTGAGTCTGGGAGAGGATCGCAATGTAGAAGAAAAGGAGAATGTAGCCACAGGGTATCCTGGAA
Seq C2 exon
GTGTTAAAAATGGACTAGGGAGGCCAGATCCTTCAGACAGCTCGTACAGAGGCCTTGTCAGACCTCAAGAGAAACCGAAGAATTCTGGGAAAGAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028586_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.881 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF122583=Microcephalin=WD(100=99.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGTTGGAGCAGTCTCAGC
R:
TTTTCTTTCCCAGAATTCTTCGGT
Band lengths:
182-1292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]