BtaEX0021917 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12729037-12736492:-
Coord C1 exon
chr10:12736256-12736492
Coord A exon
chr10:12731574-12731675
Coord C2 exon
chr10:12729037-12729093
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTGTCATTCCTCTCACTAGACT
3' ss Score
8.07
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
CTGCCCTCATGATGGAGGAGCTGAACCCCTACACCAAGATCAGCCCAGCGCTGGGTGCAGAGCGGCACTCAGTGGGTGCCGTCACGGGGATCGTCCTCCTGTTGTTCCTCATCGTGGTGCTGCTGGGACTGTTTGCCTGGCGCCGGCGGCGGCAAAAACAGAAGGGCCGGGACCTGGCTCCCCGCGTCTCCTACACGCCCGCCATGAGGATGACCAGCACTGACTACTCCCTCTCAG
Seq A exon
ACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAAGACTTCTACATTGAACTTAGACACCTCAGCCGCCCCGCTGAGCTACACTCGCCAG
Seq C2 exon
GTGCTTGTGGAACGGACAGACGTCAGAACACATACGTTATGGACAAAGGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140_MULTIEX1-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.139 C2=0.250
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(18.9=8.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGAGCTGAACCCCTAC
R:
GTTCTGACGTCTGTCCGTTCC
Band lengths:
255-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development