BtaEX0021916 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12729037-12736492:-
Coord C1 exon
chr10:12736256-12736492
Coord A exon
chr10:12732330-12732396
Coord C2 exon
chr10:12729037-12729093
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTGCTTTCCAAACAGCTC
3' ss Score
10.51
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
CTGCCCTCATGATGGAGGAGCTGAACCCCTACACCAAGATCAGCCCAGCGCTGGGTGCAGAGCGGCACTCAGTGGGTGCCGTCACGGGGATCGTCCTCCTGTTGTTCCTCATCGTGGTGCTGCTGGGACTGTTTGCCTGGCGCCGGCGGCGGCAAAAACAGAAGGGCCGGGACCTGGCTCCCCGCGTCTCCTACACGCCCGCCATGAGGATGACCAGCACTGACTACTCCCTCTCAG
Seq A exon
CTCAGTAACAAGTCCCTTGACAGAGACACGGCAGGCTGGACCCCCTACAGCTATGTGAACGTGTTAG
Seq C2 exon
GTGCTTGTGGAACGGACAGACGTCAGAACACATACGTTATGGACAAAGGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.174 C2=0.250
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(18.9=8.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTTCCTCATCGTGGTGC
R:
GTTCTGACGTCTGTCCGTTCC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development