GgaEX1035864 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17671844-17682141:-
Coord C1 exon
chr10:17682023-17682141
Coord A exon
chr10:17676715-17676781
Coord C2 exon
chr10:17671844-17671900
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTATCATACTTTTTGAACAGCTG
3' ss Score
7.62
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
ATGTGTCTCAAGGTAGCAGCAGTGTGCACTGCTTTTCCAACCCAAGCTACCACACTCTCTCGTGCGGTGTGACTTCACGCTTCTTTCCCCGTAATCTGGATGGGAACAGCTCCAGTAAG
Seq A exon
CTGAGTAACAAAATCCTTGACAGAGAAACTGCAGACTGGAGACCCTACAGCTATCTGAATGAACTAG
Seq C2 exon
GTGCTTGTGGGATGGATAGACGTCAGAACACATACATAATGGAAAAAAGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631_MULTIEX1-10/13=9-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF153301=SIT=PD(28.4=52.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000012349fB9354
Main Skipping Isoform:
ENSGALT00000012349fB9355
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCAAGGTAGCAGCAGTG
R:
TCCATTATGTATGTGTTCTGACGTCT
Band lengths:
159-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]