GgaEX1035871 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17671844-17688263:-
Coord C1 exon
chr10:17688030-17688263
Coord A exon
chr10:17682023-17682141
Coord C2 exon
chr10:17671844-17671900
Length
119 bp
Sequences
Splice sites
3' ss Seq
GATGATTGTTTTCTTCCCAGATG
3' ss Score
8.66
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
CGGCTCTTATGATGGAAGAATTAAACCCCTATACTAAAATTAGTCCTGCTCTTGGATCAGAGAGGCACTCAGTGGGAGCAATCATTGGAATTATTATTCTCCTTCTAATTATTATGGTCTTGCTGGCACTGTTTGTGTGGTATCGACGGAAACAGAAGGAGAAGGGCCATGACATGCCAAGTGTATCTTACACTCCAGCCATGAGGATGACTAATACAGATTACTCACTTTCTG
Seq A exon
ATGTGTCTCAAGGTAGCAGCAGTGTGCACTGCTTTTCCAACCCAAGCTACCACACTCTCTCGTGCGGTGTGACTTCACGCTTCTTTCCCCGTAATCTGGATGGGAACAGCTCCAGTAAG
Seq C2 exon
GTGCTTGTGGGATGGATAGACGTCAGAACACATACATAATGGAAAAAAGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631_MULTIEX1-9/13=8-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(18.9=8.9),PF0200911=Rifin_STEVOR=PD(93.4=72.2),PF153301=SIT=PU(70.3=65.8)
A:
PF153301=SIT=PD(28.4=52.5)
C2:
NO
Main Inclusion Isoform:
ENSGALT00000012349fB9355
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTCTTATGATGGAAGAATTAAAC
R:
CGTCTATCCATCCCACAAGCAC
Band lengths:
256-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]